Rv0701 - p.Thr93Ala
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
18 Sensitive
4 RR-TB
20 HR-TB
13 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
17 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 6 |
| lineage4.9 | 5 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| 5 | |
| lineage4.3.4.2 | 20 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.8 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.1.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.1.2.1;lineage4.3.4.2 | 1 |
| lineage4.6.2.2 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 72 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR7496509 | Other | None | SRR13583319 | MDR-TB | lineage4.3.4.2 | None | SRR3675494 | RR-TB | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9786843 | Other | None | ERR4822492 | Sensitive | lineage4.3.4.2 | de | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR12544125 | Sensitive | lineage4.3.4.2 | None | ERR4814104 | Sensitive | lineage4.3.4.2 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9786671 | Other | None | SRR13583358 | MDR-TB | lineage4.3.4.2 | None | ERR551814 | Sensitive | lineage4.3.4.2 | de | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11043180 | Sensitive | lineage4.3.4.2 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4814090 | Sensitive | lineage4.3.4.2 | None | ERR12015083 | Other | lineage4.8 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR29126837 | Sensitive | lineage4.3.4.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SRR29126894 | Other | lineage4.3.4.2 | None | SRR7496472 | Other | lineage4.9 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | SRR29051250 | MDR-TB | lineage4.3.4.2 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR4829611 | Sensitive | lineage4.3.4.2 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR7363132 | Sensitive | lineage4.1.2.1;lineage4.3.4.2 | None | ERR7363011 | Sensitive | lineage4.3.4.2 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR7363139 | Sensitive | lineage4.3.4.2 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR29050721 | MDR-TB | lineage4.3.4.2 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR7363013 | Sensitive | lineage4.3.4.2 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR7363087 | Sensitive | lineage4.3.4.2 | None | ERR4829187 | Sensitive | lineage4.3.4.2 | it | ERR1193828 | Sensitive | lineage4.3.4.2 | br | SRR1640750 | Other | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR7363111 | Sensitive | lineage4.3.4.2 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None |
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