Rv0005 - c.1056A>G
Drug resistance types
64 Sensitive
2 RR-TB
128 HR-TB
15 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
73 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1 | 1 |
| lineage4.1 | 2 |
| lineage4 | 42 |
| lineage4.9 | 59 |
| lineage4.1.1.2 | 1 |
| lineage3 | 3 |
| lineage4.1.2.1 | 8 |
| 104 | |
| lineage2.2.1 | 12 |
| lineage1.1 | 1 |
| lineage2.2 | 5 |
| lineage5.2 | 2 |
| lineage3.1 | 2 |
| lineage4.6.4 | 2 |
| lineage4.6.2.2 | 4 |
| lineage4.3.3 | 3 |
| lineage4.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| La1 | 2 |
| La1.8.1 | 6 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 1 |
| lineage4.8 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.8;lineage4.1 | 1 |
| lineage6 | 1 |
| La3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.3.4 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3 | 1 |
| lineage2.1 | 1 |
| lineage3.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 287 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2229143 | Other | lineage4.1.1 | None | ERR2446566 | Other | lineage4.1 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2446144 | Other | lineage3 | nl | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR5341456 | Other | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819462 | Other | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341313 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6045519 | HR-TB | None | SRR6045450 | Other | lineage4.9 | None | ERR2693239 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR5535933 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6046141 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6046046 | Other | None | SRR6045399 | Other | None | SRR6045233 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6046225 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046492 | Other | None | SRR6046299 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325447 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6325442 | HR-TB | None | ERR323037 | HR-TB | lineage4 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | ERR323036 | HR-TB | None | SRR6982405 | Sensitive | None | ERR502510 | Sensitive | lineage4 | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323041 | HR-TB | None | SRR8217918 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323055 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323063 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1063859 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063855 | Other | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3283028 | Other | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3468544 | HR-TB | None | ERR363453 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797015 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797048 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797067 | Other | La1.8.1 | None | ERR3797064 | Sensitive | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR387051 | HR-TB | None | ERR4024991 | Other | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769450 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4798262 | HR-TB | La1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358979 | Other | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359069 | Other | lineage4.9 | None | ERR6866022 | Other | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736839 | Other | None | ERR736837 | Other | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9787030 | Sensitive | lineage6 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786843 | Other | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | SRR1172717 | Other | lineage4.9 | None | SRR1169306 | Other | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13837684 | Sensitive | lineage4.9 | None | SRR13861686 | RR-TB | lineage4.9 | None | SRR13837697 | HR-TB | lineage4.9 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861266 | Sensitive | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR1640750 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR1791696 | Other | La1.8.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692905 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR8692887 | Other | None | ERR176779 | HR-TB | None | SRR6325445 | HR-TB | None | ERR161033 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675488 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | ERR181744 | HR-TB | None | ERR4815471 | Other | lineage4.9 | None | SRR3675501 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176643 | HR-TB | None | ERR4815550 | Other | lineage4 | None | SRR3675222 | Other | None | ERR181824 | HR-TB | lineage4 | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR181887 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | ERR176751 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675510 | Other | None | ERR212001 | HR-TB | None | ERR3275220 | Other | lineage3 | nl | SRR3675545 | HR-TB | None | ERR212033 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212121 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None |
|---|
