Rv3596c - c.453C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
14 Sensitive
1 RR-TB
39 HR-TB
3 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
34 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.9 | 40 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| 3 | |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2.2 | 1 |
| lineage4 | 3 |
| lineage4.3.4.2.1 | 1 |
| lineage4.6.2.2 | 4 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1 | 1 |
| lineage2.2.1 | 4 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| La3;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| lineage3 | 2 |
| La1.7.1 | 1 |
| lineage2.2.1.2 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.3.4 | 1 |
| lineage1.2.2.2 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 94 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4769452 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR212001 | HR-TB | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR6045053 | Other | lineage4 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR181887 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR9786525 | Other | lineage4 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9896144 | Other | lineage3 | None | ERR990545 | Other | lineage3 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR29096107 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR9786843 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR176651 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR13292378 | Sensitive | lineage1.2.2.2 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR18911911 | Sensitive | lineage1.2.2.2 | None | ERR736848 | Other | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6046593 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR12006550 | Sensitive | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None |
|---|
