lineage | Count |
---|---|
90 | |
lineage3.1.2 | 1 |
lineage2.2.1 | 8 |
lineage4.1.2.1 | 13 |
lineage4 | 15 |
lineage3 | 1 |
lineage4.9 | 20 |
lineage2.2.1.1 | 1 |
lineage1.1 | 1 |
lineage2.2 | 4 |
lineage4.3.3 | 6 |
lineage3.1 | 2 |
lineage4.3.4.2.1 | 1 |
lineage4.4.1.2 | 1 |
La1.8.1 | 3 |
lineage4.6.2.2 | 2 |
lineage4;lineage3.1 | 1 |
lineage4.3.2 | 1 |
lineage4.3.4.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage1.1.3.1 | 1 |
lineage4.8;lineage4.1 | 1 |
lineage6.1.3 | 1 |
lineage4.5 | 1 |
lineage4.4.1.1 | 2 |
lineage1.2.1.2.1 | 1 |
lineage1.1.1 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.8 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4;lineage1.1.2 | 1 |
spoligotype | Count |
---|---|
None | 187 |
ID | Drug resistance | Lineage | Country iso2 | ERR4818929 | HR-TB | None | ERR2513297 | Sensitive | lineage3.1.2 | None | ERR2509673 | Other | lineage2.2.1 | None | SRR5341418 | Other | None | ERR2693230 | Other | None | ERR1035138 | MDR-TB | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693239 | HR-TB | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341467 | Other | lineage4 | None | ERR2693231 | Other | None | ERR4821053 | Other | lineage3 | None | ERR2693257 | Other | None | ERR2693254 | Other | None | SRR6045892 | Sensitive | None | ERR4821655 | Sensitive | lineage4 | None | ERR278594 | HR-TB | None | SRR6325444 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045399 | Other | None | SRR6325442 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831117 | HR-TB | None | ERR294248 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR502889 | Other | None | ERR323036 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323038 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323041 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323108 | HR-TB | lineage4 | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR3283021 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR1034652 | Other | None | ERR133825 | Sensitive | lineage4 | None | ERR3283031 | HR-TB | None | ERR3283028 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3797014 | Other | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797044 | Other | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797061 | Other | None | ERR3797082 | Other | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR387051 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4188247 | HR-TB | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR4811493 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4811833 | Sensitive | lineage4.3.3 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR6358837 | HR-TB | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736848 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR736835 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787153 | Other | lineage6.1.3 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR13837544 | Sensitive | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861152 | Sensitive | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13861611 | Sensitive | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861699 | Sensitive | lineage4.9 | None | ERR4813861 | Other | lineage4.3.3 | None | SRR1640750 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR19428607 | Sensitive | lineage4.3.3 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR1035239 | HR-TB | None | SRR6325445 | HR-TB | None | SRR3675482 | HR-TB | None | ERR158583 | HR-TB | None | ERR181744 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675234 | Other | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR1750908 | Sensitive | lineage4 | None | SRR3675383 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675312 | HR-TB | lineage4 | None | ERR212034 | HR-TB | None | SRR3675510 | Other | None | SRR3675456 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | SRR3675555 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816656 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR3275196 | Other | lineage2.2.1 | nl |
---|