Rv0006 - c.909G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
6 RR-TB
17 HR-TB
6 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
40 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage9 | 1 |
| lineage4.9 | 31 |
| lineage4 | 2 |
| lineage4.8 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 2 |
| 2 | |
| M.canetti;lineage2.2 | 2 |
| La3;lineage4.9 | 5 |
| La1.7 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.2 | 1 |
| La1.7;lineage4.9 | 5 |
| lineage2.1;lineage4.9 | 1 |
| lineage2.2.1 | 2 |
| La2;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.7;lineage4.2 | 1 |
| La1.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La1.8.1 | 1 |
| lineage4.6.2.2 | 2 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage3 | 1 |
| La1;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 4 |
| lineage4.3.2.1 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La2;lineage2.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 91 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR9786843 | Other | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR11252736 | Other | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR23961549 | Other | La1.2 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR1063896 | Sensitive | None | SRR1791747 | Other | La1.8.1 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None | ERR3273109 | HR-TB | lineage4 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR176751 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798099 | Other | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR9786526 | Other | lineage4.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None |
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