Rv1173 - c.2145T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
9 Sensitive
3 RR-TB
24 HR-TB
10 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
64 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 3 |
| La1.7;M.canetti;lineage4.9 | 2 |
| 17 | |
| lineage4.3.4 | 1 |
| lineage3 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.6.2.2 | 4 |
| lineage2.2.1 | 10 |
| lineage1.1.1 | 1 |
| lineage4.9 | 22 |
| lineage4.9;lineage7 | 3 |
| lineage2.1;lineage4.9 | 6 |
| lineage4.9;lineage6.3 | 6 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 3 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.6.1 | 1 |
| lineage4 | 2 |
| La3;lineage4.9 | 3 |
| lineage2.1 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1 | 1 |
| lineage4.1.2.1 | 1 |
| lineage6.3.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage3.1;lineage9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 112 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR19303796 | Other | lineage4.3.3 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4800341 | Other | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4810741 | HR-TB | None | ERR4811142 | RR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4811075 | Other | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR12416824 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR9117721 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR28119777 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR212123 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4797201 | Other | None | SRR29050859 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR15368760 | MDR-TB | lineage2.2.1 | None | SRR29016780 | Other | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR161037 | Other | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR990545 | Other | lineage3 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR22048477 | Sensitive | lineage4.3.3 | None | SRR19303906 | Sensitive | lineage4.3.3 | None | ERR9786843 | Other | None | ERR2514692 | Other | None | ERR212001 | HR-TB | None | ERR9787197 | Other | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR3283042 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1173778 | Other | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None |
|---|
