Rv3457c - c.-428C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
17 Sensitive
2 RR-TB
23 HR-TB
7 MDR-TB
0 Pre-XDR-TB
3 XDR-TB
31 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.2 | 2 |
| lineage4.9 | 23 |
| La3;lineage4.9 | 5 |
| lineage4.9;lineage6.3 | 3 |
| lineage2.2.1 | 3 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2.2 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7;lineage4.9 | 2 |
| lineage4.8 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.6.2.2 | 4 |
| M.canetti;lineage1 | 1 |
| 6 | |
| lineage1.1.3.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.4 | 1 |
| lineage4 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.1 | 1 |
| lineage3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 83 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR12006550 | Sensitive | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR3675441 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR28119752 | Other | lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR212001 | HR-TB | None | ERR212033 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9786843 | Other | None | SRR25827682 | Other | None | SRR1181289 | Other | lineage2.2.1 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR4800341 | Other | None | ERR6358991 | HR-TB | None | ERR161037 | Other | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | ERR9896144 | Other | lineage3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR702406 | Other | lineage2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR176751 | Other | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR11252612 | Other | La3;lineage4.9 | None |
|---|
