Rv2245 - c.522C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
33 Sensitive
4 RR-TB
31 HR-TB
9 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
59 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 11 |
| La3;lineage4.9 | 10 |
| lineage4.9 | 57 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage3.1.2.1;lineage4 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4.1.1.3 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.6.2.2 | 4 |
| lineage4.3.4 | 2 |
| lineage4.1 | 1 |
| lineage4.9;lineage7 | 4 |
| lineage6.1.3 | 2 |
| lineage2.2 | 2 |
| La1.2.BCG | 1 |
| La1.6;lineage4 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.6.1 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage5.2 | 2 |
| lineage4 | 2 |
| lineage4.1.2.1 | 1 |
| lineage3 | 2 |
| 3 | |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
| La1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;lineage4 | 1 |
| M.canetti;lineage1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 138 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29385505 | HR-TB | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR28351455 | Other | lineage3.1.2.1;lineage4 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR25515230 | Other | lineage2.2.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR29096717 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR1023236 | Other | lineage6.1.3 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR29097054 | Sensitive | lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR212033 | Other | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR28923836 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | ERR4830353 | Other | La1.7 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786525 | Other | lineage4 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9896144 | Other | lineage3 | None | SRR12006550 | Sensitive | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR7535086 | Other | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4769452 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR9786843 | Other | None | SRR25515143 | Sensitive | lineage2.2.1 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR3283042 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR25534465 | Sensitive | lineage2.2.1 | None | ERR3283028 | Other | La3;lineage4 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR736848 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR13265708 | Sensitive | lineage2.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None |
|---|
