Rv0667 - c.1905C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
26 Sensitive
1 RR-TB
31 HR-TB
8 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
39 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.9 | 58 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.8.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage2.2.1 | 6 |
| lineage5.2 | 2 |
| La1;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La1.2.BCG | 1 |
| lineage4.9;lineage7 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.8 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.1.2.1 | 2 |
| La1.2 | 1 |
| lineage4.2;lineage4.9 | 3 |
| 1 | |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.1 | 1 |
| La1.7;lineage4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 107 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11252612 | Other | La3;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR11465604 | HR-TB | lineage4.8.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR926163 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR23961542 | Other | La1;lineage4.9 | None | SRR29096107 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6044835 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR29096166 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR5341456 | Other | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046046 | Other | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786525 | Other | lineage4 | None | SRR29096717 | Sensitive | lineage4.9 | None | SRR29097023 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR23961549 | Other | La1.2 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR9786843 | Other | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6046878 | Other | lineage4.9 | None | SRR29096203 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR29096276 | Sensitive | lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR9786526 | Other | lineage4.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR26331611 | Sensitive | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None |
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