Rv3596c - c.477G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
7 RR-TB
88 HR-TB
35 MDR-TB
3 Pre-XDR-TB
3 XDR-TB
74 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1;lineage4.9 | 23 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La3;lineage4.9 | 11 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 5 |
| La1.6;La3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 52 |
| lineage4.4.2 | 1 |
| La1.8.1 | 2 |
| lineage6.1.1 | 2 |
| 4 | |
| lineage4.9;lineage9 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9 | 6 |
| lineage3 | 3 |
| lineage4.6.2.2 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.2.1 | 8 |
| lineage4.1.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage4.3.4.1 | 2 |
| lineage2.2 | 3 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 4 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La1.6;lineage4 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage2.2.1.2 | 2 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.3.2 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage4.9 | 5 |
| lineage4.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La1.7.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.9;lineage7 | 3 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 2 |
| M.canetti;lineage2.2 | 3 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.5 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 229 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1162740 | Other | lineage4.1.2.1 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6046492 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR6358991 | HR-TB | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR2229143 | RR-TB | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR29096150 | Other | lineage4.9 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR5535933 | Other | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR3468544 | Other | lineage2.1;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR29096107 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR29097026 | Other | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR9786843 | Other | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR212001 | HR-TB | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR3077978 | Other | lineage1.1 | None | SRR14782054 | Other | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9896144 | Other | lineage3 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4812155 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | SRR29097037 | Other | lineage4.9 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR3675243 | Other | lineage4.9 | None | SRR1640750 | Other | None | SRR3675545 | Other | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3468607 | Other | lineage4.9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None |
|---|
