lineage | Count |
---|---|
97 | |
lineage4.1 | 1 |
lineage2.2.1 | 7 |
lineage5.2 | 2 |
lineage4.6.2.2 | 3 |
lineage4 | 12 |
La2 | 1 |
lineage4.9 | 4 |
lineage4.1.2.1 | 8 |
lineage4.1.3 | 2 |
lineage3 | 1 |
lineage2.2 | 3 |
lineage2 | 2 |
La1 | 1 |
lineage4.6.1.1 | 1 |
lineage1.1.3.1 | 1 |
lineage1.1.2 | 1 |
lineage4.8 | 2 |
lineage4.8;lineage4.1 | 1 |
lineage4.1.1 | 2 |
lineage6.2.3 | 1 |
lineage6.1.3 | 1 |
lineage6.3.1 | 1 |
lineage3.1 | 2 |
lineage4.3.3 | 1 |
lineage4.5 | 1 |
lineage6.3;lineage2.2.1 | 1 |
La1.2 | 1 |
lineage1.2.1.1 | 1 |
lineage4.1.1.2 | 1 |
lineage4.1.2 | 1 |
lineage4.9;lineage3.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 165 |
ID | Drug resistance | Lineage | Country iso2 | SRR6046540 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6789626 | Other | None | ERR294266 | HR-TB | None | SRR6982441 | Sensitive | lineage2.2.1 | None | ERR502532 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR1035157 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR067699 | HR-TB | lineage4 | None | SRR7496517 | Other | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR3283024 | Other | None | ERR3283027 | HR-TB | None | ERR3797014 | Other | None | ERR3283036 | HR-TB | None | ERR3797017 | Other | None | ERR3797044 | Other | None | ERR3797043 | HR-TB | None | ERR3797069 | Other | None | ERR3797061 | Other | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4800341 | Other | lineage3 | None | ERR4769452 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798262 | HR-TB | La1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR5336148 | Other | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6359045 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR736835 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9119669 | HR-TB | None | ERR9634265 | Sensitive | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787061 | Sensitive | lineage6.2.3 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR1172310 | HR-TB | None | ERR987722 | HR-TB | None | SRR1172234 | Other | None | SRR10809074 | Sensitive | lineage4 | None | SRR1172951 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1174897 | HR-TB | None | SRR1173400 | Other | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1184388 | Other | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR14782405 | HR-TB | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20970016 | Other | lineage2.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR23961549 | Other | La1.2 | None | ERR4815604 | HR-TB | None | SRR3675465 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR4816999 | Other | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675270 | HR-TB | None | SRR3675311 | Other | None | ERR176740 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675234 | Other | None | SRR3675510 | Other | None | ERR212138 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR212034 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816656 | HR-TB | None | SRR3742665 | HR-TB | None | ERR234659 | HR-TB | None | ERR4817735 | Other | lineage4.8 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR1035138 | MDR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR4818929 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341330 | HR-TB | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341333 | HR-TB | None | ERR2693230 | Other | None | ERR2693232 | Other | lineage4.9 | None | ERR2693257 | Other | None | ERR2693254 | Other | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6045327 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046046 | Other | None |
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