Rv2245 - c.109T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
23 Sensitive
2 RR-TB
33 HR-TB
11 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
28 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage4.9;lineage7 | 3 |
| La2;lineage2.2 | 1 |
| lineage4.4.1.1 | 10 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.9 | 45 |
| La1.6 | 8 |
| La2;lineage4.9 | 1 |
| lineage2.2.1 | 3 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.9;lineage7 | 4 |
| lineage4.3.4 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| 1 | |
| La1.7.1;lineage4.9 | 1 |
| lineage4 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.6;lineage4 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 98 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR11043334 | Sensitive | lineage4.4.1.1 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR11268018 | Other | La1.6 | None | ERR736848 | Other | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4769568 | Other | La1.6 | None | ERR926163 | Other | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR8774141 | Sensitive | lineage4.4.1.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR10680185 | MDR-TB | lineage4.4.1.1 | None | ERR11267990 | Other | La1.6 | None | ERR10680051 | RR-TB | lineage4.4.1.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR11267995 | Other | La1.6 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR11267973 | Other | La1.6 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR11268015 | Other | La1.6 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6358991 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR11268016 | Other | La1.6 | None | ERR4816656 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR4769452 | Other | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR11268040 | Other | La1.6 | None | ERR552662 | MDR-TB | lineage4.4.1.1 | None | ERR2516761 | MDR-TB | lineage4.4.1.1 | gb | ERR2516970 | MDR-TB | lineage4.4.1.1 | gb | ERR4815717 | Sensitive | lineage4.4.1.1 | gb | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR10680070 | MDR-TB | lineage4.4.1.1 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045053 | Other | lineage4 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR1166821 | Other | lineage4.1.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR8774139 | Sensitive | lineage4.4.1.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR5341373 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None |
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