Rv3596c - c.1401G>A


Drug resistance types
32 Sensitive 3 RR-TB 29 HR-TB 11 MDR-TB 1 Pre-XDR-TB 0 XDR-TB 46 Other
lineage Counts
lineage Count
lineage4.9 42
M.canetti;lineage4.9 2
La1.7;lineage3;lineage4.9;lineage7 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
La1.7;lineage4.9;lineage7 3
lineage4.9;lineage6.3 2
lineage1.1.1;lineage4 1
La1.2.BCG 1
lineage5.1.4 1
lineage1.1.1 1
La1.7;M.canetti;lineage4.9 2
1
La1.6;lineage4 1
lineage4.9;lineage6.1.3 1
La3;lineage4.9 1
lineage3.1.2.1;lineage3.1.2.2 1
lineage4.5 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
M.canetti;lineage4.9;lineage9 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
lineage4.3.1;lineage4.9;lineage6 1
La1.6;La3;lineage4.9 2
lineage2.2.1 7
lineage3.1.2.2 1
La3;lineage4.3.4 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage4.9;lineage7 3
lineage6.1.3 1
lineage6.1.1 2
La3;lineage2.1;lineage4.9;lineage6.3 1
La1.7;lineage4.2 1
lineage2.1;lineage4.9;lineage7 1
lineage3 2
lineage1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 1
La1.7;lineage4.9 3
lineage4.2.1.1;lineage4.3.3 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage2.2.1;lineage4 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La2;lineage4.9 1
lineage4.1.2.1 1
lineage2.1;lineage4.9 1
lineage4.9;lineage9 3
lineage4.4.1.1 1
lineage4 1
M.canetti;lineage1 1
La2;lineage4.9;lineage9 1
lineage4.3.2;lineage4.9 1
lineage4.1.1.3;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 122
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6046564 Sensitive lineage4.9 None
ERR13285191 Sensitive lineage4.9 None
SRR29096387 Sensitive M.canetti;lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
SRR3675387 Other lineage4.9 None
SRR3675247 Other lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR4798262 HR-TB La1.2.BCG None
ERR2513283 Sensitive lineage5.1.4 None
SRR14066533 Sensitive lineage1.1.1 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR987722 MDR-TB None
ERR3283055 HR-TB lineage4.9 None
SRR3675477 Sensitive lineage4.9 None
SRR28351554 Sensitive La1.6;lineage4 None
ERR13285192 Sensitive lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR181744 HR-TB La3;lineage4.9 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
ERR4811031 Sensitive lineage4.5 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR11252736 Other lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR387051 Other lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR3675455 Sensitive lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
ERR2693254 Other La1.6;La3;lineage4.9 None
ERR400345 Other lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR161039 HR-TB La3;lineage4.3.4 None
SRR1175508 Sensitive lineage4.9 None
ERR400326 Other lineage4.9 None
SRR3675280 RR-TB lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
ERR400336 Sensitive lineage4.9 None
ERR3283032 Other lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR9787153 Other lineage6.1.3 None
SRR29097026 Other lineage4.9 None
ERR3799304 Other lineage6.1.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR23961559 Other La1.7;lineage4.2 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR28351488 MDR-TB lineage2.2.1 None
ERR4797313 Sensitive lineage2.2.1 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR6046382 Sensitive lineage2.2.1 None
SRR17832802 HR-TB lineage3 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR29096410 Other lineage4.9 None
SRR26399239 Sensitive lineage4.9 None
ERR4811030 Sensitive lineage4.9 None
SRR5341373 Other lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
SRR9971114 Other lineage2.2.1 None
SRR3675385 Other La1.7;lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR3675501 Other La1.7;lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
ERR4821686 Sensitive lineage4.1.2.1 None
SRR3675495 Other lineage2.1;lineage4.9 None
SRR3675279 Sensitive lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR212123 Other lineage4.9 None
SRR3675582 Other lineage4.9 None
SRR7496471 Sensitive lineage4 None
SRR15014655 Other M.canetti;lineage1 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR4816466 HR-TB lineage4.9 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
SRR6044835 Other lineage4.9 None
SRR5341456 Other lineage4.9 None
SRR1180226 HR-TB lineage4.9 None
SRR3675539 HR-TB lineage4.9;lineage7 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR9787014 Other lineage6.1.1 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR400320 Sensitive lineage4.9 None
SRR3675522 Other lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR5341400 Sensitive lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
ERR3797061 Other La1.6;La3;lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR29097058 Other lineage4.9 None
ERR4798504 RR-TB lineage3 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR161037 Other lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR20970043 MDR-TB lineage2.2.1 None