Rv3793 - c.1098G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
4 Sensitive
1 RR-TB
19 HR-TB
0 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
55 Other
lineage Counts
| lineage | Count |
|---|---|
| 13 | |
| lineage4.1.1.1 | 1 |
| lineage6.1.3 | 1 |
| lineage4.1.3 | 2 |
| lineage6.3.1 | 1 |
| lineage4.9;lineage6.3 | 4 |
| lineage4.9 | 15 |
| lineage2.1 | 1 |
| lineage2.2.1 | 4 |
| lineage2.1;lineage4.9 | 5 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.8 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| lineage6 | 1 |
| La1.2 | 1 |
| lineage4.1.2.1 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| La1.6;La3;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 79 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4800341 | Other | None | ERR4811105 | HR-TB | None | ERR4811075 | Other | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR3283032 | Other | lineage4.9 | None | SRR29096107 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR29097023 | Sensitive | lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR9787165 | Other | lineage6 | None | SRR3675441 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR23961549 | Other | La1.2 | None | SRR7496472 | Other | lineage4.9 | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR4810741 | HR-TB | None | ERR4811142 | RR-TB | None | SRR28119753 | Other | lineage4.9 | None | ERR4811311 | Other | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR3675236 | Other | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR7496509 | Other | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | ERR9786604 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR29096203 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None |
|---|
