Rv3696c - c.960A>G


Drug resistance types
9 Sensitive 8 RR-TB 71 HR-TB 70 MDR-TB 2 Pre-XDR-TB 4 XDR-TB 110 Other
lineage Counts
lineage Count
lineage4.9 51
M.canetti;lineage1 1
La3;M.canetti;lineage2.1;lineage4.9 9
lineage4.9;lineage6.3 7
lineage4.1.1.1 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage4.9;lineage7 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
M.canetti;lineage2.1;lineage6.3 2
M.canetti;lineage4.9 4
lineage2.2.1 7
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 3
lineage4.3.4.1 2
lineage5.3 1
La1;lineage4.9 1
lineage4.1.3 2
lineage4.2;lineage4.6.3;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 10
lineage4.9;lineage9 1
lineage2.1;lineage4.9 17
M.canetti;lineage2.1;lineage4.9 16
lineage2.1 5
La3 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage6.1.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.6.2.2 3
lineage4.1.2.1 6
La1.7;lineage4.9 2
17
lineage3.1;lineage9 1
La1.7;M.canetti;lineage4.9 1
lineage3 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage2.1;lineage2.2;lineage6.3 1
lineage1.1.2 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage6.3.1 1
La1.7.X-unk4;lineage4.9 1
lineage2.1;lineage6.3 2
La1.6;La3;lineage4.9 2
lineage4 4
lineage4.3.4.2.1 2
La1.6;La3;lineage4.6.4;lineage4.9 1
La1;lineage2;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 4
M.canetti;lineage2.1;lineage4.9;lineage6.3 5
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.1;lineage4.8 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage4.8 2
lineage1.1.1 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage4.8.1 1
lineage4.2;lineage4.9 1
M.canetti;lineage2.2.2;lineage6.2 2
M.canetti;lineage2.2 2
lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage4.9;lineage9 1
La1.7;lineage4.9;lineage6 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.3.4 1
La3;M.canetti;lineage2.2.1 1
La3;lineage2.1;lineage4.9 2
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage4.9 2
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage2.1;lineage4.1.4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La3;lineage2 1
M.canetti;lineage2.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.4.1.2 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
La3;M.canetti;lineage3.1 1
lineage4.7 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La3;lineage2.1;lineage6.3 1
La1.2.BCG 1
lineage2.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La2;lineage4.9 1
lineage2.2.1;lineage3 1
lineage2.2.1;lineage6.3 1
lineage4.9;lineage6.1.3 1
lineage3.1 1
spoligotype Counts
spoligotype Count
None 274
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR926160 Other lineage4.9 None
ERR3283032 Other lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR323058 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR4769474 HR-TB lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR176751 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4817731 HR-TB lineage4.9 None
SRR10808399 Sensitive lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR3283042 HR-TB lineage4.9 None
ERR460916 Sensitive lineage5.3 None
ERR133825 HR-TB La1;lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR10808730 Other lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3416776 Other lineage2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1172817 Other La3 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR9787165 Other lineage6.1.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR3675515 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
ERR9786682 Other lineage4.1.2.1 None
ERR323038 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR161037 HR-TB lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR9786843 Other None
SRR1184372 MDR-TB None
SRR18213713 HR-TB None
ERR212001 HR-TB None
ERR4407463 HR-TB None
ERR4816999 Other None
SRR1196768 MDR-TB None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358979 HR-TB lineage4.9 None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675441 RR-TB lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR25827687 MDR-TB lineage1.1.2 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR9787139 Other lineage6.3.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4816466 HR-TB lineage4.9 None
ERR702406 Other lineage2.1 None
ERR926156 Other lineage4.9 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797061 Other La1.6;La3;lineage4.9 None
ERR3283044 Other lineage4 None
ERR176518 Sensitive lineage4.3.4.2.1 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
ERR5311089 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
ERR3283030 HR-TB lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR14801749 HR-TB lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR6789621 Other lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR5311096 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR9786525 RR-TB lineage4.1;lineage4.8 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR6358837 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR4816478 HR-TB lineage4 None
ERR3804155 Other lineage4.1.2.1 None
ERR11049020 Other lineage4.8 None
SRR14066533 RR-TB lineage1.1.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR2693257 HR-TB La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR3797086 Sensitive lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR5311094 HR-TB lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR3675464 MDR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR3797080 Sensitive lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR9786671 Other None
SRR7496517 Other None
ERR9787197 Other None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR3797029 Other lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR736817 HR-TB lineage4.3.4 None
ERR161034 HR-TB lineage4.3.4.2.1 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR10808668 Other lineage2.2.1 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675558 MDR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
ERR9786569 Other lineage4.8 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR323115 Sensitive lineage4.9 None
SRR1184312 Other lineage2.2.1 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR3675234 HR-TB La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6046066 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR3283016 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR176658 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693254 Other La1.6;La3;lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675461 RR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR3797070 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR926164 Other lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR11466499 Other lineage4.3.4.1 None
SRR1172234 Other lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
SRR1196546 Other lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9786601 Other lineage4.1.2.1 None
ERR5311083 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR6045233 Other M.canetti;lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496523 Other lineage4.7 None
ERR4811493 HR-TB lineage4.9 None
SRR3675554 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR971389 Other lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
ERR4815604 Other None
ERR9117709 Other None
SRR6789626 Other None
ERR234659 HR-TB None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR25827682 Other None
SRR28351339 MDR-TB lineage4 None
SRR3675236 Other None
SRR28119805 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR4798262 HR-TB La1.2.BCG None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR1710057 Other lineage2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR18003019 Other lineage2.2.1 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4819932 Other lineage4.7 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926165 Other lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR5311098 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3797015 HR-TB lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR736848 Other lineage4.9 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR3797016 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045526 Other lineage4.9 None
ERR323047 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR1063883 HR-TB lineage4.9 None
ERR176643 Other La3;lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR26159043 Other lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR1184346 HR-TB lineage3.1 None