lineage | Count |
---|---|
lineage4 | 54 |
lineage4.9 | 38 |
104 | |
La1.3 | 2 |
lineage4.9;La1.3 | 1 |
lineage3 | 5 |
lineage4.5 | 2 |
lineage2 | 3 |
lineage4.6.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage2.2.1.2 | 10 |
lineage1.1.2 | 1 |
lineage2.2.1 | 10 |
lineage4.3.2 | 1 |
lineage4.3.3 | 3 |
lineage3.1 | 2 |
lineage2.2 | 4 |
lineage4.3.4.1 | 1 |
lineage2.1 | 2 |
lineage3.1.3 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.3 | 1 |
lineage4;lineage2 | 1 |
lineage4.4.1.1 | 1 |
lineage4.8;La3 | 1 |
lineage4.1.1.2 | 1 |
lineage4.1.2.1 | 1 |
lineage4.7 | 1 |
lineage4.2.1 | 1 |
lineage4.1.2 | 1 |
spoligotype | Count |
---|---|
None | 257 |
ID | Drug resistance | Lineage | Country iso2 | ERR133825 | Sensitive | lineage4 | None | ERR3283058 | Other | lineage4.9 | None | ERR3283024 | Other | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283036 | HR-TB | None | ERR363500 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR3797044 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797014 | Other | None | ERR3797043 | HR-TB | None | ERR3797069 | Other | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4812155 | Sensitive | None | ERR4769551 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4797313 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR5336148 | Other | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR702406 | HR-TB | None | ERR6359069 | Other | lineage4.9 | None | ERR6866547 | Sensitive | lineage4 | None | ERR702404 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736848 | HR-TB | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | SRR21798457 | Other | lineage2.2.1.2 | None | SRR1175049 | RR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | ERR9117709 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR990545 | Other | lineage3 | None | SRR1169194 | Other | None | SRR1172817 | HR-TB | None | SRR1173118 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175074 | MDR-TB | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1196494 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR19303884 | HR-TB | None | SRR15316190 | Sensitive | lineage2.2.1.2 | None | SRR1710057 | Other | lineage2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR15316471 | Sensitive | lineage2.2.1.2 | None | SRR15368973 | Other | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR20632814 | Sensitive | lineage4 | None | SRR19304036 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969833 | Sensitive | lineage2.2.1.2 | None | SRR21276944 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR3675455 | Sensitive | lineage4 | None | SRR25534353 | Sensitive | lineage2.2.1.2 | None | SRR25206946 | MDR-TB | lineage2.2.1.2 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR4815604 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675477 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675265 | Other | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675311 | Other | None | SRR3675318 | Other | lineage4.9 | None | SRR3675387 | Sensitive | None | ERR176751 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675522 | Other | None | ERR4816964 | Other | lineage4.9 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR4816999 | Other | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4817037 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675572 | Other | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4815815 | Sensitive | lineage4 | None | ERR212033 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817998 | Other | lineage3 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818394 | Other | lineage4.9 | None | SRR5341396 | Other | lineage4 | None | DRR185049 | Other | lineage2.2.1.2 | vn | ERR4818561 | HR-TB | lineage4 | None | ERR4818615 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819462 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR2693231 | Other | None | ERR2514821 | Other | lineage2.2.1 | None | ERR4819933 | Other | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341323 | Sensitive | lineage4 | None | ERR2517475 | Other | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR6045503 | HR-TB | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6045053 | Other | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046046 | Other | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046492 | Other | None | SRR6046540 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046897 | Sensitive | lineage4 | None | SRR7496517 | Other | None | ERR4811301 | MDR-TB | lineage2.2.1.2 | cn | ERR485006 | HR-TB | lineage4.9 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831638 | Sensitive | None | ERR502532 | HR-TB | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7535086 | Other | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323043 | HR-TB | None | ERR037234 | Sensitive | lineage4.9 | None | ERR067712 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1035157 | Other | lineage4.9 | None |
---|