Rv1305 - c.-148A>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
2 RR-TB
21 HR-TB
6 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
57 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1;lineage4.9 | 4 |
| lineage4.3.3 | 1 |
| lineage2.1 | 3 |
| lineage2.1;lineage4.9 | 9 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| 15 | |
| lineage4.9 | 14 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| La3 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.1.1.1 | 2 |
| La3;lineage2.2.1 | 1 |
| lineage4.9;lineage6.3 | 7 |
| La3;lineage4.9 | 4 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4 | 1 |
| lineage4.7 | 1 |
| lineage2.2 | 1 |
| lineage2.2.1 | 4 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.7;lineage4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 91 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR3416776 | Other | lineage2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4800341 | Other | None | ERR4811105 | HR-TB | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675236 | Other | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR1172728 | RR-TB | La3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR212033 | Other | lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1172951 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4811142 | RR-TB | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR7535086 | Other | None | SRR1165699 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR28119752 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | ERR11252736 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR4810741 | HR-TB | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR29093909 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR25827682 | Other | None | SRR1184372 | MDR-TB | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None |
|---|
