Rv0006 - c.888G>C


Drug resistance types
38 Sensitive 2 RR-TB 52 HR-TB 19 MDR-TB 1 Pre-XDR-TB 0 XDR-TB 83 Other
lineage Counts
lineage Count
lineage4.9 51
lineage2.2.1 7
lineage4.9;lineage6.3 5
lineage2.1;lineage4.9 10
lineage4.1.2.1 5
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.7 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage4.3.3 29
M.canetti;lineage4.9;lineage9 1
lineage4.6.2.2 3
M.canetti;lineage2.1;lineage4.9 1
lineage2.1;lineage6.3 2
lineage4.3.4.2.1 1
lineage2.1;lineage4.9;lineage6.3 5
lineage4.6.3;lineage4.9;lineage6.3 1
lineage2.2.2 1
15
La1.8.1 1
M.canetti;lineage1 1
lineage4.9;lineage9 2
La1.7;lineage4.9 1
lineage4.3.2 1
La2;lineage4.9;lineage9 1
La1.7.1;lineage4.9 1
lineage4.1.3 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.4.1.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.2;lineage4.9 1
lineage4.6.1.1 1
lineage4.3.4 1
La1.7.X-unk4;lineage4.9 1
La1.7.1 1
La2;lineage4.9 1
lineage1;lineage4.9 1
lineage4.1.1.1 1
lineage3.1.2.2 1
lineage4 1
lineage4.3.4.1 1
lineage4.4.1.2 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.7;lineage4.2 1
lineage5.2 2
lineage4.9;lineage7 1
lineage4.3.2;lineage4.9 1
lineage4.1.2 1
La1.2.BCG;La1.8.1 1
lineage4.8 1
M.canetti;lineage4.2;lineage4.9 1
lineage2.2 1
La3;lineage2 1
lineage6.3.1 1
lineage2.1 2
lineage1.1.2 1
La3;lineage1.1.2 1
M.canetti;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La3;lineage4.9 1
lineage3 2
La1.7.1;La1.7.X-unk4 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage1.2.2.2 1
La1.7.1;La1.7.X-unk4;lineage7 1
La3;lineage2.2.1 1
La3;lineage2.1;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 195
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1180226 HR-TB lineage4.9 None
SRR29231479 RR-TB lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR926155 Sensitive lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR1173778 Other lineage4.9 None
SRR3675222 Other La1.7 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR29126306 Sensitive lineage4.3.3 None
SRR1172310 HR-TB lineage4.9 None
SRR3675275 Other lineage4.9 None
SRR25905992 MDR-TB lineage4.3.3 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR4872096 MDR-TB lineage4.6.2.2 None
SRR3675214 Other lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR926162 Sensitive lineage4.9 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR22250251 Sensitive lineage4.3.3 None
ERR926160 Sensitive lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
ERR3283030 HR-TB lineage4.9 None
SRR21732902 Sensitive lineage4.3.3 None
ERR4816999 Other None
ERR3797019 Other La1.8.1 None
SRR6045219 HR-TB lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
SRR3675248 Other lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR4820854 Other lineage4.1.2.1 None
SRR3675236 Other None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR9117805 Other lineage4.3.2 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR9899695 Sensitive lineage4.3.3 None
SRR7535086 Other None
ERR926154 Sensitive lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR12416840 MDR-TB lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
SRR19304101 Sensitive lineage4.3.3 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR1183111 HR-TB lineage4.9 None
SRR3675311 Other lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR3675221 Other lineage4.9 None
ERR987722 MDR-TB None
SRR6789621 Other lineage4.9 None
SRR29124288 Sensitive lineage4.3.3 None
ERR9786671 Other None
ERR926156 Sensitive lineage4.9 None
ERR2514821 Sensitive lineage2.2.1 None
ERR9121171 Sensitive lineage4.3.3 None
ERR9786604 Other None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
ERR736817 HR-TB lineage4.3.4 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR7131263 HR-TB lineage4.3.3 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
SRR1792478 HR-TB La1.7.1 None
ERR323039 HR-TB La2;lineage4.9 None
SRR25905991 MDR-TB lineage4.3.3 None
ERR4815604 Other None
ERR1035157 Other lineage4.9 None
SRR6046066 Other lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR9786617 Other lineage4.1.1.1 None
ERR4828782 Sensitive lineage4.3.3 None
SRR29127003 Sensitive lineage4.3.3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR4829796 HR-TB lineage4.3.3 None
ERR926161 Sensitive lineage4.9 None
ERR4829634 Sensitive lineage4.3.3 it
ERR1063862 HR-TB lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR926163 Other lineage4.9 None
ERR3283044 Other lineage4 None
SRR14520143 Sensitive lineage4.3.3 None
ERR926159 Sensitive lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR971389 Sensitive lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR3797047 MDR-TB lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR4195325 Sensitive lineage4.3.3 None
SRR7496509 Other None
ERR9119502 MDR-TB lineage4.6.2.2 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
SRR23961559 Other La1.7;lineage4.2 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR25905994 MDR-TB lineage4.3.3 None
SRR6046485 Other lineage4.9 None
ERR3797070 Other lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
ERR2514692 Other None
ERR9786421 Other lineage4.1.2.1 None
SRR6046305 Sensitive lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR736875 HR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR926165 Sensitive lineage4.9 None
SRR3675572 Other None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR4818347 Other lineage4.1.2 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR926157 Sensitive lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR4829632 Sensitive lineage4.3.3 it
ERR9786569 Other lineage4.8 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
SRR7131110 HR-TB lineage4.3.3 None
ERR4810624 MDR-TB lineage2.2 None
SRR18213713 HR-TB None
SRR29126678 Sensitive lineage4.3.3 None
SRR29124277 Sensitive lineage4.3.3 None
SRR20969677 HR-TB La3;lineage2 None
ERR9787139 Other lineage6.3.1 None
SRR1710057 Other lineage2.1 None
SRR19303854 Sensitive lineage4.3.3 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR3797069 Other lineage4.9 None
SRR3416776 Other lineage2.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR7496517 Other None
ERR4815373 Sensitive lineage4.3.3 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR19303807 Sensitive lineage4.3.3 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR6045526 Other lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
SRR13180330 HR-TB lineage4.3.3 None
ERR4829417 Sensitive lineage4.3.3 it
SRR26159043 Other lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR926158 Sensitive lineage4.9 None
SRR6152872 Sensitive lineage4.3.3 ca
ERR4798504 RR-TB lineage3 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR3283021 HR-TB lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
SRR28860027 Sensitive lineage4.3.3 None
ERR4800341 Other lineage3 None
ERR4872094 MDR-TB lineage5.2 None
ERR1063849 HR-TB lineage4.9 None
ERR926164 Other lineage4.9 None
ERR9117709 Other None
SRR3675549 Other lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR473332 Other lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR7496472 Other lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR2510763 HR-TB lineage4.3.3 it
ERR9786642 Other lineage4.1.2.1 None
ERR9787197 Other None
ERR234659 Other None
ERR4814352 Other lineage2.2.1 None