Rv0006 - c.888G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
40 Sensitive
2 RR-TB
52 HR-TB
18 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
79 Other
lineage Counts
| lineage | Count |
|---|---|
| 20 | |
| lineage4.9 | 51 |
| lineage4.3.3 | 31 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 10 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| M.canetti;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1.8.1 | 1 |
| La3;lineage4.9 | 1 |
| lineage2.2.1 | 9 |
| lineage4.9;lineage9 | 2 |
| lineage3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage4.9;lineage6.3 | 5 |
| La1.7;lineage4.9 | 1 |
| lineage4.3.4.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La3;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| lineage4.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage5.2 | 2 |
| lineage1.1.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.9;lineage7 | 1 |
| La1.7 | 1 |
| lineage4.6.2.2 | 2 |
| La2;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.6.1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage6.3.1 | 1 |
| lineage4 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 192 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9787197 | Other | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR6152872 | Sensitive | lineage4.3.3 | ca | ERR9786671 | Other | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR9121171 | Sensitive | lineage4.3.3 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR25905992 | MDR-TB | lineage4.3.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3675214 | Other | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR25905991 | MDR-TB | lineage4.3.3 | None | SRR29126306 | Sensitive | lineage4.3.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | SRR21732902 | Sensitive | lineage4.3.3 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR3797019 | Other | La1.8.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR29127003 | Sensitive | lineage4.3.3 | None | ERR6358991 | HR-TB | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR4798504 | RR-TB | lineage3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR29124288 | Sensitive | lineage4.3.3 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675236 | Other | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675549 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR29341480 | Sensitive | lineage4.3.3 | None | ERR473332 | Other | lineage4.9 | None | SRR7496509 | Other | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4829417 | Sensitive | lineage4.3.3 | it | ERR926156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR6046305 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | ERR4815373 | Sensitive | lineage4.3.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR29124277 | Sensitive | lineage4.3.3 | None | SRR22250251 | Sensitive | lineage4.3.3 | None | SRR6046066 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR13180330 | HR-TB | lineage4.3.3 | None | ERR4797201 | Other | None | ERR4816999 | Other | None | ERR4818347 | Other | lineage4.1.2 | None | SRR29126678 | Sensitive | lineage4.3.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR14520143 | Sensitive | lineage4.3.3 | None | SRR28860027 | Sensitive | lineage4.3.3 | None | ERR9117721 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR7535086 | Other | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4195325 | Sensitive | lineage4.3.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR19304101 | Sensitive | lineage4.3.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675221 | Other | lineage4.9 | None | ERR2514692 | Other | None | ERR987722 | MDR-TB | None | ERR4829632 | Sensitive | lineage4.3.3 | it | ERR4829634 | Sensitive | lineage4.3.3 | it | ERR4814352 | Other | lineage2.2.1 | None | ERR4828782 | Sensitive | lineage4.3.3 | None | ERR2514821 | Sensitive | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2510763 | HR-TB | lineage4.3.3 | it | ERR926165 | Sensitive | lineage4.9 | None | ERR9786604 | Other | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR7131110 | HR-TB | lineage4.3.3 | None | ERR4872096 | MDR-TB | lineage4.6.2.2 | None | SRR1710057 | Other | lineage2.1 | None | ERR4815604 | Other | None | SRR7131263 | HR-TB | lineage4.3.3 | None | SRR19303854 | Sensitive | lineage4.3.3 | None | SRR7496517 | Other | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR19303807 | Sensitive | lineage4.3.3 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR28859627 | Sensitive | lineage4.3.3 | None | ERR4800341 | Other | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR26159043 | Other | lineage4.9 | None | ERR4829796 | HR-TB | lineage4.3.3 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12416824 | HR-TB | None | ERR3283044 | Other | lineage4 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR9899695 | Sensitive | lineage4.3.3 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR9117709 | Other | None | ERR9119502 | MDR-TB | lineage4.6.2.2 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR25905994 | MDR-TB | lineage4.3.3 | None | SRR6046485 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None |
|---|
