Rv0529 - c.-282G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
10 Sensitive
2 RR-TB
17 HR-TB
4 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
77 Other
lineage Counts
| lineage | Count |
|---|---|
| 20 | |
| lineage4.9 | 22 |
| lineage4.1.1 | 12 |
| lineage4.9;lineage6.3 | 5 |
| lineage2.1;lineage4.9 | 7 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.1.1.1 | 2 |
| lineage2.2.1 | 10 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.8 | 3 |
| lineage6 | 1 |
| lineage4.3.4.1 | 2 |
| La3 | 2 |
| La3;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1 | 4 |
| La3;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage4.3.3 | 2 |
| La1.7;lineage4.2 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 115 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR25827682 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR6046112 | Sensitive | lineage4.1.1 | gb | ERR9786604 | Other | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR29096541 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4800341 | Other | None | SRR29096401 | Sensitive | lineage4.1.1 | None | SRR29051077 | Other | lineage4.9 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR4811142 | RR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | SRR28119777 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR13289903 | Sensitive | lineage4.1.1 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | ERR038277 | Sensitive | lineage4.1.1 | gb | ERR038278 | Sensitive | lineage4.1.1 | gb | ERR4820690 | Sensitive | lineage4.1.1 | gb | SRR1196566 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR1175074 | Other | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | SRR1169194 | Other | lineage4.9 | None | SRR22251086 | Sensitive | lineage4.1.1 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR29231149 | Other | lineage4.1.1 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | SRR29096232 | Sensitive | lineage4.1.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR11466174 | Other | lineage4.8 | None | SRR29051093 | Other | lineage4.9 | None | SRR12416824 | HR-TB | None | ERR9117721 | HR-TB | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR29050928 | Other | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR1184381 | MDR-TB | None | ERR4831062 | Sensitive | lineage4.1.1 | np | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1173633 | Other | lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR2512505 | Sensitive | lineage4.1.1 | gb | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR29096939 | HR-TB | lineage4.1.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173218 | Other | lineage4.3.3 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR4797201 | Other | None | ERR4810741 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | SRR28119753 | Other | lineage4.9 | None | ERR4811311 | Other | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR29093909 | Other | lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8 | None | SRR7535086 | Other | None | SRR1172728 | RR-TB | La3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR702406 | Other | lineage2.1 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR29097037 | Other | lineage4.9 | None | ERR2514692 | Other | None |
|---|
