Rv3596c - c.2196C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
2 RR-TB
23 HR-TB
9 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
70 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 10 |
| lineage2.1;lineage4.9 | 5 |
| lineage4.9 | 32 |
| 14 | |
| La1.7.1;La1.7.X-unk4 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage6.3.1 | 1 |
| La3;lineage4.9 | 2 |
| lineage4.8 | 1 |
| La3 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.3.3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.1.2.1 | 5 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.8.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1 | 3 |
| La1.7;lineage4.9 | 4 |
| lineage2.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 5 |
| lineage2.2.1;lineage3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage3.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 109 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1184312 | Other | lineage2.2.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR28119777 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR29016780 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR6046485 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | SRR25827682 | Other | None | SRR1172857 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR9786671 | Other | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR9786604 | Other | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1172951 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR3675222 | Other | La1.7 | None | SRR1196583 | Other | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7617649 | Other | La1.8.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1710057 | Other | lineage2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR1196677 | Other | lineage2.2 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR2446566 | Other | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | ERR4811142 | RR-TB | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR29093909 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR1172728 | RR-TB | La3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR29096541 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | SRR1196494 | MDR-TB | None |
|---|
