Rv0006 - c.1923C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
14 Sensitive
3 RR-TB
26 HR-TB
12 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
79 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4.2.1 | 1 |
| lineage4.9 | 33 |
| lineage1.2.1.1 | 1 |
| lineage2.2.1 | 10 |
| lineage4.1.1.1 | 1 |
| lineage2.1;lineage4.9 | 8 |
| lineage4 | 2 |
| 20 | |
| lineage4.1.1.3 | 3 |
| lineage2.2.2;lineage4 | 1 |
| La3;lineage2.2.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.2.1 | 6 |
| lineage4.8 | 4 |
| La3;lineage4.9 | 3 |
| La3 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.9;lineage7 | 3 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage6.3 | 4 |
| lineage4.3.3 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1 | 4 |
| lineage2.2.1.2 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage6 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.1.2 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2.2.1.1 | 1 |
| La1.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.2 | 1 |
| lineage3.1 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 139 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4797201 | Other | None | ERR4811105 | HR-TB | None | SRR6789626 | Other | None | ERR4810741 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | SRR29093909 | Other | lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR4817893 | Other | lineage4.8 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR28119777 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR29016780 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR25827682 | Other | None | SRR1172857 | Other | None | SRR1173153 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3416776 | Other | lineage2.1 | None | SRR6046210 | Other | lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR12015083 | Other | lineage4.8 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR4800341 | Other | None | SRR26159043 | Other | lineage4.9 | None | SRR29049025 | Sensitive | lineage4.9 | None | ERR4811142 | RR-TB | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR13291814 | Sensitive | lineage4.4.1.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR29231425 | Sensitive | lineage4.9 | None | SRR12006550 | Sensitive | None | ERR9117721 | HR-TB | None | ERR9787165 | Other | lineage6 | None | SRR1165699 | Other | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR7240033 | Other | La1.8.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR1173355 | Other | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None |
|---|
