Rv0006 - c.-287G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
10 Sensitive
2 RR-TB
22 HR-TB
9 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.8 | 2 |
| lineage4.9 | 23 |
| lineage2.2.1 | 7 |
| lineage3.1 | 1 |
| 11 | |
| lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage4.9 | 2 |
| lineage2.1 | 3 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.9;lineage7 | 4 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.5 | 1 |
| lineage2.1;lineage4.9 | 6 |
| La3;lineage2.1;lineage4.9 | 2 |
| La2;lineage2.2 | 1 |
| La2;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.3.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 93 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR867542 | HR-TB | lineage4.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR4817893 | Other | lineage4.8 | None | SRR1165699 | Other | lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR29016780 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR6789621 | Other | lineage4.9 | None | ERR4817060 | Other | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | SRR1196494 | MDR-TB | None | SRR1184312 | Other | lineage2.2.1 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6789626 | Other | None | ERR4810741 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR4811311 | Other | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1196566 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR387051 | Other | lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1173363 | Other | None | SRR21732980 | Other | lineage4.3.3 | None | ERR4407463 | HR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR1173355 | Other | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR2027263 | Other | lineage4 | None | SRR1196546 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None |
|---|
