Rv1854c - c.816C>T
Drug resistance types
2 Sensitive
0 RR-TB
9 HR-TB
1 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
36 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 3 |
| lineage4.1.2.1 | 2 |
| La3;lineage4.9 | 3 |
| lineage2.1;lineage4.9 | 6 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage1.1.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| lineage2.1 | 4 |
| La3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage3.1 | 1 |
| 5 | |
| lineage2.2.1 | 2 |
| lineage4.4 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.7 | 1 |
| La3;lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 50 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1196546 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR12882554 | Sensitive | lineage1.1.2 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR4800341 | Other | lineage3 | None | ERR702406 | Other | lineage2.1 | None | SRR1172817 | Other | La3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR29231086 | Sensitive | lineage4.4 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1710057 | Other | lineage2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675236 | Other | None | SRR7535086 | Other | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR25827682 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None |
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