ERR13265528
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
SRR6045242
|
Other
|
lineage2.1;lineage4.9
|
None
|
SAMN02360577
|
HR-TB
|
lineage3
|
None
|
ERR3283040
|
HR-TB
|
lineage4.9
|
None
|
ERR1063856
|
HR-TB
|
M.canetti;lineage4.9;lineage9
|
None
|
SRR1048991
|
HR-TB
|
lineage2;lineage4.9
|
None
|
SRR20969677
|
HR-TB
|
La3;lineage2
|
None
|
SRR1013577
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1173629
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4811022
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR19303884
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR1048994
|
HR-TB
|
lineage4.9
|
None
|
ERR323108
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SAMN02360586
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4811105
|
HR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR25827497
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR1048865
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR1174897
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
SAMN02360571
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SAMN02360590
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4816999
|
Other
|
|
None
|
SRR1013607
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1048982
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR1013570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02360585
|
HR-TB
|
lineage4.5
|
None
|
SRR1184380
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR6046720
|
HR-TB
|
lineage4.9;lineage9
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
ERR176793
|
Other
|
lineage4.1.1.1
|
None
|
SRR1049041
|
HR-TB
|
lineage2.2.1;lineage4
|
None
|
SAMN02360591
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048852
|
HR-TB
|
lineage2.2;lineage4.9
|
None
|
SRR1172885
|
HR-TB
|
lineage4.9
|
None
|
ERR702406
|
Other
|
lineage2.1
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
ERR5336148
|
Other
|
lineage2.1;lineage6.3
|
None
|
ERR323056
|
HR-TB
|
lineage4.4.1.2
|
None
|
SRR1049026
|
HR-TB
|
lineage2.2;lineage4.9
|
None
|
SRR1048853
|
HR-TB
|
lineage2;lineage4.9
|
None
|
ERR323043
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1048968
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR23961559
|
Other
|
La1.7;lineage4.2
|
None
|
SAMN02360562
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR1184294
|
Other
|
lineage4.9
|
None
|
SRR1049006
|
HR-TB
|
lineage2.2.2;lineage4
|
None
|
SRR1048966
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28119805
|
Other
|
lineage4.9
|
None
|
ERR4817060
|
Other
|
|
None
|
SRR8552928
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR12142341
|
HR-TB
|
lineage2.1
|
None
|
ERR176778
|
HR-TB
|
lineage4.9
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
ERR4819781
|
Other
|
lineage2.2.1
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
ERR736865
|
HR-TB
|
lineage4.3.2;lineage4.9
|
None
|
SRR1048996
|
Sensitive
|
lineage4.5
|
None
|
SRR1144809
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1048965
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5341333
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR1048980
|
HR-TB
|
lineage3
|
None
|
SRR3675465
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR1048997
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1144744
|
HR-TB
|
lineage2.2.1
|
None
|
SRR19304036
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6046540
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR1172310
|
HR-TB
|
lineage4.9
|
None
|
SRR1013589
|
HR-TB
|
lineage2.2.1
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
SRR3742657
|
Pre-XDR-TB
|
La3;M.canetti;lineage2.2.1
|
None
|
ERR736874
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
SRR1013622
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1063839
|
MDR-TB
|
La2;lineage2.2
|
None
|
SRR1048993
|
HR-TB
|
lineage4.9
|
None
|
ERR3797069
|
Other
|
lineage4.9
|
None
|
SRR26399973
|
Other
|
La3;lineage4.9
|
None
|
SRR3416776
|
Other
|
lineage2.1
|
None
|
ERR4811142
|
RR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR323039
|
HR-TB
|
La2;lineage4.9
|
None
|
SRR3675529
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675467
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR1063857
|
MDR-TB
|
La2;lineage4.9
|
None
|
SRR6045526
|
Other
|
lineage4.9
|
None
|
ERR323045
|
HR-TB
|
lineage1;lineage4.9
|
None
|
SRR1048983
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR2027263
|
Other
|
lineage4
|
None
|
SRR6789626
|
Other
|
|
None
|
SRR1047996
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1048868
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048885
|
HR-TB
|
lineage2.2;lineage4
|
None
|
SRR1048869
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR1049040
|
HR-TB
|
lineage2
|
None
|
ERR4798648
|
MDR-TB
|
lineage3.1.2.2
|
None
|
SAMN02360595
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048998
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6045327
|
Other
|
lineage2.1;lineage4.3.2;lineage4.9
|
None
|
SRR3675236
|
Other
|
|
None
|
SRR3675524
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR1013554
|
MDR-TB
|
lineage2.2.2;lineage4
|
None
|
ERR1023525
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR323053
|
MDR-TB
|
La2;lineage4.9;lineage9
|
None
|
SRR1048870
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR1048975
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4800341
|
Other
|
lineage3
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
SRR1048988
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1049027
|
HR-TB
|
lineage2.2.2;lineage4.9
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
ERR736867
|
Other
|
lineage2.1;lineage4.9
|
None
|
SAMN02360564
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR1183111
|
HR-TB
|
lineage4.9
|
None
|
SRR1013599
|
HR-TB
|
lineage2.2.1.1;lineage4
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
ERR176560
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SAMN02360579
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR987722
|
MDR-TB
|
|
None
|
ERR234659
|
Other
|
|
None
|
SRR28119756
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR212034
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SAMN02360563
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048886
|
HR-TB
|
lineage2.2.2;lineage4
|
None
|
SRR1049007
|
HR-TB
|
lineage2.2.2
|
None
|
SAMN02360570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4818347
|
Other
|
lineage4.1.2
|
None
|
ERR502524
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
SRR1048867
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3283027
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1175052
|
HR-TB
|
lineage4.9
|
None
|
SRR1013602
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4810741
|
HR-TB
|
La3;lineage2.1;lineage6.3
|
None
|
ERR987729
|
HR-TB
|
lineage3.1.2.1;lineage3.1.2.2
|
None
|
ERR6358755
|
Other
|
lineage4.6.1.1
|
None
|
SRR3742665
|
HR-TB
|
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
SRR18213713
|
HR-TB
|
|
None
|
SAMN02360583
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1710057
|
Other
|
lineage2.1
|
None
|
ERR736871
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4811075
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR25827687
|
MDR-TB
|
lineage1.1.2
|
None
|
SAMN02360580
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1049005
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR736863
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SAMN02360581
|
HR-TB
|
lineage2.2.1
|
None
|
SAMN02360556
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048995
|
HR-TB
|
lineage4.5
|
None
|
SRR1048866
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR3675216
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR405219
|
HR-TB
|
La1.7;lineage3.1;lineage4
|
None
|
ERR4769474
|
HR-TB
|
lineage4.9
|
None
|
ERR216938
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR5341470
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
SRR1013569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1196546
|
Other
|
lineage4.9
|
None
|
SAMN02360574
|
HR-TB
|
lineage2.2.1
|
None
|
ERR176779
|
HR-TB
|
lineage4.9
|
None
|
ERR4811311
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1048986
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1013578
|
HR-TB
|
lineage2.2.2;lineage4
|
None
|
SRR8217918
|
HR-TB
|
lineage4.9
|
None
|
ERR736859
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1047993
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13265748
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR702404
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR1334034
|
Other
|
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3
|
None
|
SRR5341302
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
ERR502532
|
Other
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR1184346
|
HR-TB
|
lineage3.1
|
None
|
ERR212125
|
HR-TB
|
lineage4.9
|
None
|
SRR1049023
|
HR-TB
|
lineage4.9
|
None
|
SRR12416824
|
HR-TB
|
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
SRR1048992
|
HR-TB
|
lineage2.2;lineage4
|
None
|
ERR2514692
|
Other
|
|
None
|
SRR25827682
|
Other
|
|
None
|
SRR1048981
|
HR-TB
|
lineage3
|
None
|
ERR4814352
|
Other
|
lineage2.2.1
|
None
|
SRR1048969
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR1048987
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1049022
|
HR-TB
|
lineage2.2.2;lineage4.9
|
None
|
SRR1013604
|
HR-TB
|
lineage2.2.1
|
None
|