lineage | Count |
---|---|
lineage4.9 | 45 |
122 | |
lineage4.8 | 2 |
lineage4 | 37 |
lineage4.4.1.1 | 2 |
lineage2.2.1 | 8 |
lineage2.2 | 4 |
lineage4.1;lineage1 | 1 |
lineage4.8;La3 | 1 |
La1.8.1 | 2 |
lineage4.1.1.2 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.1.2.1 | 7 |
La1 | 2 |
lineage4.1.3 | 2 |
lineage2 | 3 |
lineage1.2.2.2 | 1 |
lineage3 | 2 |
lineage4.5 | 2 |
lineage4.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage1.1.3.1 | 1 |
lineage1.1.2 | 1 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
lineage6.3.1 | 1 |
lineage4.3.3 | 3 |
lineage4.4.1.1.1 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage3.1 | 2 |
lineage4.3.4.1 | 1 |
lineage2.1 | 2 |
lineage4.1 | 1 |
lineage4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 264 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675270 | HR-TB | None | SRR3675279 | Other | None | ERR2229542 | Other | lineage4.8 | None | SRR3675387 | Sensitive | None | SRR3675311 | Other | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675522 | Other | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR4816999 | Other | None | SRR3675547 | Other | lineage4.9 | None | ERR4817060 | RR-TB | None | ERR4817037 | Other | lineage4.9 | None | ERR212034 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675574 | HR-TB | None | SRR3675572 | Other | None | SRR3675571 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818615 | Other | None | ERR234659 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR1035138 | MDR-TB | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341456 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341302 | HR-TB | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR2514692 | Other | None | SRR5341323 | Sensitive | lineage4 | None | ERR2446382 | Other | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5535933 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6045519 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046397 | Other | None | SRR6046245 | Other | lineage4.9 | None | ERR294266 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | SRR6789626 | Other | None | SRR6485010 | MDR-TB | lineage2.2.1 | None | ERR4831638 | Sensitive | None | ERR502943 | HR-TB | None | ERR502532 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496517 | Other | None | ERR323043 | HR-TB | None | SRR7535086 | Other | None | ERR1035122 | Sensitive | None | ERR323085 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR323045 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063859 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR137286 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3797046 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3797071 | Other | lineage4.9 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797058 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797069 | Other | None | ERR400326 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR5336148 | Other | None | ERR400345 | Other | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR4769452 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4769450 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4812269 | Sensitive | lineage4.1.2 | None | ERR4811030 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4812155 | Sensitive | None | ERR6358979 | Other | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736835 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117709 | HR-TB | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786671 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787165 | Other | lineage6 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1169194 | Other | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172858 | MDR-TB | lineage4.3.3 | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173153 | HR-TB | None | SRR1173118 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173363 | HR-TB | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184388 | Other | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196768 | MDR-TB | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12142341 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416824 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR15368973 | Other | None | SRR1710057 | Other | lineage2.1 | None | SRR14782405 | HR-TB | None | SRR14801749 | Sensitive | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | ERR176779 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | ERR4815604 | HR-TB | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827682 | Other | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675488 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675229 | Other | lineage4 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675501 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675222 | Other | None | ERR3275450 | Other | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None |
---|