Rv0006 - c.1278C>T
Drug resistance types
16 Sensitive
1 RR-TB
21 HR-TB
11 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
64 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;lineage1.1.2 | 1 |
| lineage4.9 | 21 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 7 |
| lineage4.1.1.1 | 1 |
| lineage4.9;lineage6.3 | 5 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.1.2.1 | 6 |
| lineage2.1 | 4 |
| La3;lineage2.1;lineage4.9 | 3 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| 7 | |
| lineage1.1.2 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La3;lineage4.8 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 4 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage5.2 | 2 |
| lineage3.1 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage1.1.3.1 | 4 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2.2.1.1 | 3 |
| lineage4 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 115 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1165699 | Other | lineage4.9 | None | SRR28119777 | Other | lineage4.9 | None | ERR9121188 | Sensitive | lineage4.1.2.1 | None | ERR176751 | Other | lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR1184294 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1172857 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4818969 | Sensitive | lineage1.1.2 | gb | SRR3675232 | Other | lineage4.1.2.1 | None | SRR1173778 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1710057 | Other | lineage2.1 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3416776 | Other | lineage2.1 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR6789626 | Other | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR1173633 | Other | lineage4.9 | None | SRR29053270 | Other | lineage1.1.3.1 | None | ERR4407463 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR13267626 | Sensitive | lineage1.1.3.1 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR7902605 | Sensitive | lineage1.1.3.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR15722985 | Sensitive | lineage2.2.1.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR21675604 | Other | lineage1.1.3.1 | None | SRR21659813 | Sensitive | lineage2.2.1.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR553374 | Sensitive | lineage4.1.2.1 | de | ERR12015083 | Other | La3;lineage4.8 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR2514692 | Other | None | SRR6789621 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR29051476 | Sensitive | lineage2.2.1.1 | None | SRR1184372 | MDR-TB | None | SRR12006550 | Sensitive | lineage1.2.1.2 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR1172951 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR29016780 | Other | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR4195268 | Sensitive | lineage4.1.2.1 | None |
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