Rv2043c - c.-746C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
32 Sensitive
3 RR-TB
17 HR-TB
10 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
62 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 9 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.9 | 11 |
| lineage4.1.1.1 | 1 |
| lineage4 | 2 |
| lineage1.2.2.2 | 4 |
| lineage4.1.2 | 1 |
| 17 | |
| lineage2.2.1 | 7 |
| lineage2.1 | 4 |
| lineage3.1 | 1 |
| lineage1.1.1 | 39 |
| lineage4.9;lineage6.3 | 3 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 2 |
| lineage4.8 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.1.3 | 2 |
| lineage4.6.1 | 1 |
| lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 127 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR1035157 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4553706 | MDR-TB | lineage1.2.2.2 | None | SRR29051077 | Other | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4810741 | HR-TB | None | ERR4811142 | RR-TB | None | SRR28119753 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR3675236 | Other | None | SRR12416824 | HR-TB | None | SRR7535086 | Other | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR29017621 | MDR-TB | lineage1.2.2.2 | None | ERR9117709 | Other | None | SRR28119811 | Other | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR4797996 | Sensitive | lineage1.1.1 | in | ERR751998 | Sensitive | lineage1.1.1 | th | ERR752187 | Sensitive | lineage1.1.1 | th | ERR751709 | Sensitive | lineage1.1.1 | th | ERR751884 | Sensitive | lineage1.1.1 | th | ERR768030 | Sensitive | lineage1.1.1 | th | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR751843 | Sensitive | lineage1.1.1 | th | SRR5709896 | Pre-XDR-TB | lineage1.1.1 | th | SRR29017378 | MDR-TB | lineage1.2.2.2 | None | SRR29096541 | Other | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | SRR11662200 | MDR-TB | lineage1.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | SRR16370296 | Other | lineage1.1.1 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4797201 | Other | None | ERR4800341 | Other | None | ERR4811075 | Other | None | ERR4811311 | Other | None | ERR3283044 | Other | lineage4 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR21732957 | Sensitive | lineage1.1.1 | None | ERR751724 | Sensitive | lineage1.1.1 | th | ERR751749 | Sensitive | lineage1.1.1 | th | ERR752207 | Sensitive | lineage1.1.1 | th | ERR752198 | Sensitive | lineage1.1.1 | th | ERR752114 | RR-TB | lineage1.1.1 | th | ERR751750 | Sensitive | lineage1.1.1 | th | ERR752218 | Sensitive | lineage1.1.1 | th | ERR751969 | Sensitive | lineage1.1.1 | th | ERR718549 | Sensitive | lineage1.1.1 | th | ERR718202 | Sensitive | lineage1.1.1 | th | ERR752079 | Sensitive | lineage1.1.1 | th | ERR718389 | Sensitive | lineage1.1.1 | th | ERR718538 | Sensitive | lineage1.1.1 | th | ERR718433 | Sensitive | lineage1.1.1 | th | ERR751730 | Sensitive | lineage1.1.1 | th | ERR775798 | Sensitive | lineage1.1.1 | th | ERR718278 | Sensitive | lineage1.1.1 | th | ERR768006 | Sensitive | lineage1.1.1 | th | ERR752213 | Sensitive | lineage1.1.1 | th | ERR752047 | Sensitive | lineage1.1.1 | th | SRR28119805 | Other | lineage4.9 | None | ERR4817060 | Other | None | ERR234659 | Other | None | SRR1184372 | MDR-TB | None | SRR19325668 | HR-TB | lineage1.1.1 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4553711 | MDR-TB | lineage1.2.2.2 | None | SRR1710057 | Other | lineage2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR11662656 | MDR-TB | lineage1.1.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR29052638 | Other | lineage1.1.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR6358755 | Other | lineage4.6.1 | None | SRR1196546 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR983241 | MDR-TB | lineage2.2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR22249777 | Sensitive | lineage1.1.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR29097037 | Other | lineage4.9 | None | ERR752145 | Sensitive | lineage1.1.1 | th | ERR752049 | HR-TB | lineage1.1.1 | th | ERR751957 | Sensitive | lineage1.1.1 | th | ERR751873 | Sensitive | lineage2.2.1 | th | SRR1172857 | Other | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR718499 | Sensitive | lineage1.1.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR25534179 | HR-TB | lineage2.2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None |
|---|
