lineage | Count |
---|---|
165 | |
lineage6.3;lineage2.2.1 | 1 |
lineage2.2.2 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.1.1.1 | 1 |
lineage4.1 | 1 |
lineage4.1.1 | 1 |
lineage4.9 | 14 |
lineage2.2.1 | 9 |
lineage4.3.4.2.1 | 3 |
lineage2.1 | 2 |
lineage3;lineage2.1 | 1 |
lineage4 | 15 |
lineage2.2 | 5 |
lineage4.6.2.2 | 3 |
lineage4.1.2.1 | 5 |
lineage4.2.1 | 1 |
lineage3.1 | 4 |
La2 | 1 |
lineage4.1.2 | 1 |
La1 | 1 |
lineage2 | 2 |
lineage3 | 1 |
lineage4.3.2 | 2 |
lineage1.1.2 | 1 |
lineage4.3.3 | 3 |
lineage2.2.1.1 | 1 |
lineage4.5 | 1 |
spoligotype | Count |
---|---|
None | 247 |
ID | Drug resistance | Lineage | Country iso2 | ERR4815604 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR8025500 | Pre-XDR-TB | lineage2.2.2 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR6325445 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR1035239 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR4814331 | Sensitive | lineage4.9 | None | ERR161033 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675488 | HR-TB | None | SRR3675311 | Other | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675222 | Other | None | SRR3675501 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR176651 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675510 | Other | None | SRR3675545 | HR-TB | None | SRR3675502 | Other | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR212123 | Other | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4816466 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR5341302 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR7496472 | Other | None | ERR502912 | Other | lineage2.2.1 | None | ERR1035162 | Other | None | ERR234659 | HR-TB | None | ERR4818929 | HR-TB | None | SRR5341418 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341470 | HR-TB | None | ERR2693231 | Other | None | SRR5341333 | HR-TB | None | ERR2693239 | HR-TB | None | ERR270615 | Sensitive | lineage4.3.4.2.1 | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR2693227 | Other | lineage4.9 | None | SRR6045519 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045233 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046397 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325447 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR502532 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502524 | HR-TB | La2 | None | ERR294266 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502889 | Other | None | SRR8217918 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR323041 | HR-TB | None | SRR7496509 | Other | None | ERR323038 | HR-TB | None | ERR323039 | HR-TB | None | SRR7496517 | Other | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR1034652 | Other | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063858 | HR-TB | None | ERR133986 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283028 | Other | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR3445502 | HR-TB | lineage4 | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797014 | Other | None | ERR3797015 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797017 | Other | None | ERR3797048 | HR-TB | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3797069 | Other | None | ERR3797082 | Other | lineage4.9 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR403298 | HR-TB | lineage4 | None | ERR5336148 | Other | None | ERR4188350 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798406 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811022 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR6358837 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736835 | HR-TB | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736865 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9786671 | Other | None | ERR9119669 | HR-TB | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786604 | Other | None | ERR9786843 | Other | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1173118 | Other | None | SRR1172310 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173629 | Other | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173788 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1175049 | RR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184372 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1196566 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196768 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12142341 | HR-TB | None | SRR1640750 | HR-TB | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR13837642 | RR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR15368973 | Other | None | SRR1710057 | Other | lineage2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None |
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