Rv2477c - c.1497C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
21 Sensitive
2 RR-TB
22 HR-TB
4 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
64 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 39 |
| lineage2.1;lineage6.3 | 2 |
| La1.7;lineage4.9 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 10 |
| 17 | |
| lineage6.3.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage2.1 | 2 |
| La3 | 2 |
| lineage2.2.1 | 5 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.8 | 1 |
| lineage4 | 1 |
| lineage4.4.1.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 2 |
| La1.6;lineage4 | 1 |
| lineage4.3.4 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage3.1.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage3.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 115 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173355 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4811311 | Other | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12416824 | HR-TB | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR1172728 | RR-TB | La3 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | SRR1172857 | Other | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1710057 | Other | lineage2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4817735 | Other | lineage4.8 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4800341 | Other | None | ERR4810741 | HR-TB | None | ERR4811142 | RR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | SRR3675236 | Other | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9787197 | Other | None | SRR1184372 | MDR-TB | None | ERR926165 | Sensitive | lineage4.9 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR926163 | Other | lineage4.9 | None | SRR7535086 | Other | None | ERR212138 | HR-TB | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1172234 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None |
|---|
