SRR22251586
|
Other
|
lineage2.1
|
None
|
ERR4831956
|
MDR-TB
|
lineage2.1
|
None
|
SRR5709883
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR10828193
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR11715718
|
Sensitive
|
lineage2.1
|
None
|
SRR11715724
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR8237298
|
Sensitive
|
lineage2.1
|
ch
|
DRR130093
|
MDR-TB
|
lineage2.1
|
None
|
ERR4821572
|
Sensitive
|
lineage2.1
|
None
|
SRR15316176
|
Other
|
lineage2.1
|
None
|
SRR1710066
|
Sensitive
|
lineage2.1
|
cn
|
SRR30340068
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR1873393
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4831602
|
MDR-TB
|
lineage2.1
|
vn
|
SRR26399765
|
Sensitive
|
lineage2.1
|
None
|
SRR5114018
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR11662620
|
MDR-TB
|
lineage2.1
|
None
|
SRR5709899
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR5073995
|
Sensitive
|
lineage2.1
|
vn
|
ERR9119231
|
HR-TB
|
lineage2.1
|
None
|
SRR11715722
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR13290674
|
MDR-TB
|
lineage2.1
|
None
|
SRR21576630
|
MDR-TB
|
lineage2.1
|
None
|
SRR5817473
|
MDR-TB
|
lineage2.1
|
au
|
SRR15368923
|
Sensitive
|
lineage2.1
|
None
|
ERR7911475
|
RR-TB
|
lineage2.1
|
vn
|
ERR7911509
|
MDR-TB
|
lineage2.1
|
vn
|
SRR10185945
|
MDR-TB
|
lineage2.1
|
None
|
SRR21732985
|
Sensitive
|
lineage2.1
|
None
|
SRR5067475
|
Sensitive
|
lineage2.1
|
vn
|
SRR5710021
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR9787197
|
Other
|
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SRR28119805
|
Other
|
lineage4.9
|
None
|
ERR4817862
|
HR-TB
|
lineage2.1
|
gb
|
ERR4830363
|
HR-TB
|
lineage2.1
|
vn
|
ERR4830397
|
HR-TB
|
lineage2.1
|
vn
|
SRR26399299
|
HR-TB
|
lineage2.1
|
None
|
SRR8651652
|
MDR-TB
|
lineage2.1
|
cn
|
SRR8552928
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR13439886
|
HR-TB
|
lineage2.1
|
None
|
SRR28741098
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741103
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741115
|
MDR-TB
|
lineage2.1
|
None
|
ERR473314
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR29440797
|
Sensitive
|
lineage2.1
|
None
|
ERR4831637
|
MDR-TB
|
lineage2.1
|
vn
|
DRR188928
|
Sensitive
|
lineage2.1
|
None
|
SRR10341351
|
MDR-TB
|
lineage2.1;lineage2.2.1
|
None
|
SRR10341352
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR28119756
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR13291887
|
Sensitive
|
lineage2.1
|
None
|
SRR28741108
|
MDR-TB
|
lineage2.1
|
None
|
SRR30180406
|
MDR-TB
|
lineage2.1
|
None
|
SRR10828639
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR11662326
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR11662417
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR11662502
|
MDR-TB
|
lineage2.1
|
None
|
SRR11662666
|
MDR-TB
|
lineage2.1
|
None
|
SRR1710064
|
Sensitive
|
lineage2.1
|
cn
|
SRR6480524
|
Sensitive
|
lineage2.1
|
None
|
SRR28868845
|
Sensitive
|
lineage2.1
|
None
|
ERR323047
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4819422
|
HR-TB
|
lineage4.9
|
None
|
ERR736865
|
HR-TB
|
lineage4.3.2;lineage4.9
|
None
|
SRR1710068
|
Sensitive
|
lineage2.1
|
cn
|
ERR9786604
|
Other
|
|
None
|
SRR1710063
|
Sensitive
|
lineage2.1
|
cn
|
SRR1710071
|
RR-TB
|
lineage2.1
|
cn
|
SRR1144764
|
Sensitive
|
lineage2.1
|
None
|
DRR473770
|
Sensitive
|
lineage2.1
|
None
|
SRR24799276
|
Sensitive
|
lineage2.1
|
None
|
SRR5073710
|
Sensitive
|
lineage2.1
|
vn
|
SRR5073822
|
HR-TB
|
lineage2.1
|
vn
|
SRR5073883
|
Sensitive
|
lineage2.1
|
vn
|
SRR6045380
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR8773616
|
MDR-TB
|
lineage2.1
|
None
|
ERR13290673
|
Sensitive
|
lineage2.1
|
None
|
ERR13265528
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR4831618
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741111
|
MDR-TB
|
lineage2.1
|
None
|
ERR6358837
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR21576627
|
MDR-TB
|
lineage2.1
|
None
|
SRR29050928
|
Other
|
lineage4.9
|
None
|
SRR5709814
|
MDR-TB
|
lineage2.1
|
th
|
ERR551044
|
HR-TB
|
lineage2.1
|
None
|
SRR28868379
|
Sensitive
|
lineage2.1
|
None
|
SRR28741118
|
MDR-TB
|
lineage2.1
|
None
|
SRR22249862
|
Sensitive
|
lineage2.1
|
None
|
ERR13291064
|
HR-TB
|
lineage2.1
|
None
|
ERR13291073
|
MDR-TB
|
lineage2.1
|
None
|
DRR130078
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR1034652
|
Other
|
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2
|
None
|
SRR21576700
|
MDR-TB
|
lineage2.1
|
None
|
ERR7737924
|
MDR-TB
|
lineage2.1
|
None
|
ERR3283027
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR26399751
|
HR-TB
|
lineage2.1
|
None
|
SRR20969753
|
Sensitive
|
lineage2.1;lineage2.2.1
|
None
|
SRR21576681
|
MDR-TB
|
lineage2.1
|
None
|
ERR13291036
|
MDR-TB
|
lineage2.1
|
None
|
SRR5067642
|
Sensitive
|
lineage2.1
|
vn
|
SRR5114017
|
Pre-XDR-TB
|
lineage2.1
|
None
|
DRR189026
|
Sensitive
|
lineage2.1
|
None
|
SRR11715723
|
MDR-TB
|
lineage2.1
|
None
|
DRR474007
|
Sensitive
|
lineage2.1
|
None
|
SRR11662325
|
MDR-TB
|
lineage2.1
|
None
|
SRR3742665
|
HR-TB
|
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR13290709
|
MDR-TB
|
lineage2.1
|
None
|
SRR16100240
|
Sensitive
|
lineage2.1
|
None
|
ERR11068593
|
Sensitive
|
lineage2.1
|
None
|
ERR2843484
|
Other
|
lineage2.1
|
None
|
SRR28119717
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR5067405
|
Other
|
lineage2.1
|
vn
|
ERR2843485
|
HR-TB
|
lineage2.1
|
None
|
SRR28741097
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR21576560
|
MDR-TB
|
lineage2.1
|
None
|
ERR323058
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046460
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
SRR5114022
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR9787139
|
Other
|
lineage6.3.1
|
None
|
SRR21576574
|
MDR-TB
|
lineage2.1
|
None
|
ERR736871
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR29055629
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
ERR752262
|
Other
|
lineage2.1
|
th
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR10808989
|
Sensitive
|
lineage2.1
|
None
|
ERR4830396
|
MDR-TB
|
lineage2.1
|
vn
|
SRR11662628
|
MDR-TB
|
lineage2.1
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR10828200
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR921502
|
Pre-XDR-TB
|
lineage2.1;lineage2.2.1
|
None
|
SRR11715719
|
MDR-TB
|
lineage2.1
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
ERR9119439
|
HR-TB
|
lineage2.1
|
None
|
SRR5067458
|
Pre-XDR-TB
|
lineage2.1
|
vn
|
SRR22249713
|
HR-TB
|
lineage2.1
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
SRR26112263
|
Sensitive
|
lineage2.1
|
None
|
SRR5065604
|
Sensitive
|
lineage2.1
|
vn
|
SRR3675490
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR10185944
|
MDR-TB
|
lineage2.1
|
None
|
SRR5065382
|
Sensitive
|
lineage2.1
|
vn
|
SRR5065551
|
Other
|
lineage2.1
|
vn
|
DRR474050
|
Sensitive
|
lineage2.1
|
None
|
SRR7496472
|
Other
|
lineage4.9
|
None
|
ERR4832002
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR26936969
|
MDR-TB
|
lineage2.1
|
None
|
SRR11828983
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR775791
|
Sensitive
|
lineage2.1
|
th
|
SRR11662572
|
MDR-TB
|
lineage2.1
|
None
|
SRR22250260
|
Sensitive
|
lineage2.1
|
None
|
SRR26399652
|
Sensitive
|
lineage2.1
|
None
|
SRR25207056
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4831997
|
MDR-TB
|
lineage2.1
|
None
|
ERR2446339
|
Sensitive
|
lineage2.1
|
nl
|
ERR323038
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
DRR189007
|
Sensitive
|
lineage2.1
|
None
|
SRR10341347
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4811877
|
HR-TB
|
lineage2.1
|
pe
|
SRR11828971
|
MDR-TB
|
lineage2.1
|
None
|
SRR11828981
|
Sensitive
|
lineage2.1
|
th
|
SRR24083740
|
Sensitive
|
lineage2.1
|
None
|
DRR184642
|
Sensitive
|
lineage2.1
|
vn
|
SRR3724672
|
Sensitive
|
lineage2.1
|
None
|
SRR3675554
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR21747059
|
MDR-TB
|
lineage2.1
|
None
|
ERR234216
|
Sensitive
|
lineage2.1
|
None
|
ERR8773681
|
HR-TB
|
lineage2.1
|
None
|
SRR11828992
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR28409607
|
Sensitive
|
lineage2.1
|
None
|
SRR3724666
|
HR-TB
|
lineage2.1
|
None
|
SRR27450002
|
Sensitive
|
lineage2.1
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR13290914
|
HR-TB
|
lineage2.1
|
None
|
SRR25827682
|
Other
|
|
None
|
SRR1172857
|
Other
|
|
None
|
SRR26399167
|
HR-TB
|
lineage2.1
|
None
|
ERR4828566
|
HR-TB
|
lineage2.1
|
vn
|
ERR13439885
|
HR-TB
|
lineage2.1
|
None
|
ERR13290728
|
MDR-TB
|
lineage2.1
|
None
|
ERR13266537
|
Other
|
lineage2.1
|
None
|
SRR28741106
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741109
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741117
|
MDR-TB
|
lineage2.1
|
None
|
SRR30180482
|
RR-TB
|
lineage2.1
|
None
|
SRR30180480
|
MDR-TB
|
lineage2.1
|
None
|
SRR30180222
|
MDR-TB
|
lineage2.1
|
None
|
SRR30180343
|
MDR-TB
|
lineage2.1
|
None
|
SRR30180344
|
MDR-TB
|
lineage2.1
|
None
|
SRR30180323
|
MDR-TB
|
lineage2.1
|
None
|
SRR30180473
|
MDR-TB
|
lineage2.1
|
None
|
ERR126600
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR234252
|
Sensitive
|
lineage2.1
|
us
|
SRR12142341
|
HR-TB
|
lineage2.1
|
None
|
SRR5065294
|
Sensitive
|
lineage2.1
|
vn
|
SRR5067408
|
HR-TB
|
lineage2.1
|
vn
|
SRR5073656
|
Sensitive
|
lineage2.1
|
vn
|
SRR26112230
|
Sensitive
|
lineage2.1
|
None
|
SRR26399879
|
Other
|
lineage2.1
|
None
|
ERR13285337
|
MDR-TB
|
lineage2.1
|
None
|
SRR10394883
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR11715721
|
MDR-TB
|
lineage2.1
|
None
|
SRR11828987
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR5067510
|
Sensitive
|
lineage2.1
|
vn
|
SRR11828961
|
MDR-TB
|
lineage2.1
|
None
|
SRR11828988
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR11828991
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR15723006
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR20969910
|
Sensitive
|
lineage2.1
|
None
|
SRR3675558
|
HR-TB
|
M.canetti;lineage4.1.1.3;lineage6.3;lineage8
|
None
|
SRR5074054
|
HR-TB
|
lineage2.1
|
vn
|
SRR14519956
|
Other
|
lineage2.1
|
None
|
ERR553373
|
Sensitive
|
lineage2.1
|
de
|
SRR5341333
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR5709887
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR4828640
|
HR-TB
|
lineage2.1
|
vn
|
SRR29017514
|
Other
|
lineage2.1
|
None
|
SRR29017279
|
Sensitive
|
lineage2.1
|
None
|
ERR752234
|
MDR-TB
|
lineage2.1
|
th
|
SRR21732243
|
Sensitive
|
lineage2.1
|
None
|
ERR323060
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR30182621
|
Sensitive
|
lineage2.1
|
None
|
ERR3797016
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR22251890
|
Sensitive
|
lineage2.1
|
None
|
SRR5065301
|
Sensitive
|
lineage2.1
|
vn
|
SRR27450268
|
Sensitive
|
lineage2.1
|
None
|
ERR4831874
|
Pre-XDR-TB
|
lineage2.1
|
vn
|
ERR4831996
|
MDR-TB
|
lineage2.1
|
vn
|
ERR13245795
|
Sensitive
|
lineage2.1
|
None
|
SRR29017507
|
Other
|
lineage2.1
|
None
|
SRR28859824
|
HR-TB
|
lineage2.1
|
None
|
ERR3283036
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR13291075
|
MDR-TB
|
lineage2.1
|
None
|
ERR13290943
|
MDR-TB
|
lineage2.1
|
None
|
SRR10341353
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR13290711
|
RR-TB
|
lineage2.1
|
None
|
ERR13291010
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741101
|
MDR-TB
|
lineage2.1
|
None
|
SRR29440868
|
Sensitive
|
lineage2.1
|
None
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5067713
|
Sensitive
|
lineage2.1
|
vn
|
SRR10040398
|
MDR-TB
|
lineage2.1
|
None
|
ERR2843486
|
HR-TB
|
lineage2.1
|
None
|
ERR8773684
|
MDR-TB
|
lineage2.1
|
None
|
SRR1710062
|
Other
|
lineage2.1
|
cn
|
SRR28339297
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR26937132
|
RR-TB
|
lineage2.1
|
None
|
SRR11662627
|
MDR-TB
|
lineage2.1
|
None
|
SRR1710061
|
Sensitive
|
lineage2.1
|
cn
|
SRR21747020
|
MDR-TB
|
lineage2.1
|
None
|
SRR6339664
|
MDR-TB
|
lineage2.1
|
None
|
SRR14520114
|
Sensitive
|
lineage2.1
|
None
|
ERR2026698
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR6358755
|
Other
|
lineage4.6.1.1
|
None
|
SRR5065283
|
Other
|
lineage2.1
|
vn
|
SRR10394882
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR6152905
|
HR-TB
|
lineage2.1
|
ca
|
SRR10040213
|
MDR-TB
|
lineage2.1
|
None
|
SRR5067285
|
Sensitive
|
lineage2.1
|
vn
|
ERR4814575
|
Sensitive
|
lineage2.1
|
None
|
SRR5067461
|
HR-TB
|
lineage2.1
|
vn
|
SRR11662296
|
MDR-TB
|
lineage2.1
|
None
|
SRR11662308
|
MDR-TB
|
lineage2.1
|
None
|
ERR841493
|
Sensitive
|
lineage2.1
|
None
|
ERR4822352
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR11081113
|
Sensitive
|
lineage2.1
|
None
|
SRR11828960
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741105
|
MDR-TB
|
lineage2.1
|
None
|
SRR5065560
|
MDR-TB
|
lineage2.1
|
vn
|
SRR21277570
|
HR-TB
|
lineage2.1
|
None
|
ERR4811554
|
MDR-TB
|
lineage2.1;lineage2.2.1.1
|
cn
|
SRR3742657
|
Pre-XDR-TB
|
La3;M.canetti;lineage2.2.1
|
None
|
SRR11662289
|
MDR-TB
|
lineage2.1
|
None
|
SRR1710057
|
Other
|
lineage2.1
|
None
|
ERR4811075
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR21576605
|
RR-TB
|
lineage2.1
|
None
|
SRR10809132
|
Sensitive
|
lineage2.1
|
None
|
ERR5311083
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR10828644
|
MDR-TB
|
lineage2.1
|
None
|
SRR10828181
|
MDR-TB
|
lineage2.1;lineage2.2.1
|
None
|
ERR4832040
|
HR-TB
|
lineage2.1
|
None
|
SRR21747071
|
MDR-TB
|
lineage2.1
|
None
|
SRR21709618
|
Sensitive
|
lineage2.1
|
None
|
SRR11828986
|
MDR-TB
|
lineage2.1
|
th
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
SRR21576689
|
MDR-TB
|
lineage2.1
|
None
|
SRR17729383
|
Sensitive
|
lineage2.1
|
None
|
ERR4830412
|
HR-TB
|
lineage2.1
|
vn
|
DRR261132
|
HR-TB
|
lineage2.1
|
None
|
ERR13258518
|
MDR-TB
|
lineage2.1
|
None
|
SRR5074182
|
Sensitive
|
lineage2.1
|
vn
|
SRR11662498
|
Pre-XDR-TB
|
lineage2.1
|
None
|
DRR188492
|
Sensitive
|
lineage2.1
|
None
|
ERR4811142
|
RR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1710060
|
Sensitive
|
lineage2.1
|
cn
|
SRR8237361
|
Sensitive
|
lineage2.1
|
None
|
ERR13290912
|
MDR-TB
|
lineage2.1
|
None
|
ERR4828548
|
Sensitive
|
lineage2.1
|
vn
|
SRR10809080
|
RR-TB
|
lineage2.1
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
ERR13290732
|
MDR-TB
|
lineage2.1
|
None
|
SRR29051076
|
Sensitive
|
lineage2.1
|
None
|
SRR5709824
|
MDR-TB
|
lineage2.1
|
th
|
SRR5709872
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR11828964
|
MDR-TB
|
lineage2.1
|
None
|
SRR10040230
|
MDR-TB
|
lineage2.1
|
None
|
SRR5073548
|
Other
|
lineage2.1
|
vn
|
ERR2514124
|
Sensitive
|
lineage2.1
|
None
|
SRR21690002
|
Sensitive
|
lineage2.1
|
None
|
SRR5073902
|
Other
|
lineage2.1
|
vn
|
SRR11662474
|
MDR-TB
|
lineage2.1
|
None
|
SRR20969467
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR25206882
|
MDR-TB
|
lineage2.1;lineage2.2.1.1
|
None
|
SRR12072600
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR10808945
|
Sensitive
|
lineage2.1
|
None
|
SRR20969953
|
HR-TB
|
lineage2.1
|
None
|
ERR8773618
|
MDR-TB
|
lineage2.1
|
None
|
SRR11662288
|
MDR-TB
|
lineage2.1
|
None
|
ERR13290981
|
MDR-TB
|
lineage2.1
|
None
|
SRR5065418
|
Sensitive
|
lineage2.1
|
vn
|
SRR5065619
|
Other
|
lineage2.1
|
vn
|
SRR26400065
|
MDR-TB
|
lineage2.1
|
None
|
ERR13290702
|
MDR-TB
|
lineage2.1
|
None
|
SRR11828970
|
MDR-TB
|
lineage2.1
|
None
|
ERR1873396
|
Pre-XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR11043783
|
Sensitive
|
lineage2.1
|
None
|
SRR25827497
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR775787
|
Sensitive
|
lineage2.1
|
th
|
ERR270697
|
HR-TB
|
lineage2.1
|
None
|
ERR4828547
|
Sensitive
|
lineage2.1
|
vn
|
SRR10040389
|
MDR-TB
|
lineage2.1
|
None
|
SRR11715715
|
MDR-TB
|
lineage2.1
|
None
|
SRR10808635
|
Sensitive
|
lineage2.1
|
None
|
ERR9786645
|
Other
|
lineage4.6.2.2
|
None
|
SRR26937143
|
MDR-TB
|
lineage2.1
|
None
|
SRR22251329
|
Other
|
lineage2.1
|
None
|
ERR11049136
|
MDR-TB
|
lineage2.1
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR11662528
|
MDR-TB
|
lineage2.1
|
None
|
DRR261166
|
HR-TB
|
lineage2.1
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
ERR323041
|
HR-TB
|
M.canetti;lineage2.1
|
None
|
ERR386953
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797070
|
Other
|
lineage4.9
|
None
|
DRR130141
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR5065292
|
HR-TB
|
lineage2.1
|
vn
|
SRR5074174
|
Other
|
lineage2.1
|
vn
|
SRR12416824
|
HR-TB
|
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
SRR3205958
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR22249747
|
MDR-TB
|
lineage2.1
|
None
|
SRR29051417
|
HR-TB
|
lineage2.1
|
None
|
SRR26399649
|
Sensitive
|
lineage2.1
|
None
|
SRR26399630
|
Sensitive
|
lineage2.1
|
None
|
SRR26399854
|
MDR-TB
|
lineage2.1
|
None
|
SRR11828978
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR11774878
|
Sensitive
|
lineage2.1
|
None
|
SRR11828982
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR11828985
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR29093105
|
Other
|
lineage2.2.2;lineage4
|
None
|
SRR5073499
|
Sensitive
|
lineage2.1
|
vn
|
SRR5709798
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR13258511
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR29053595
|
Sensitive
|
lineage2.1
|
None
|
ERR6359045
|
Other
|
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3
|
None
|
ERR13290957
|
MDR-TB
|
lineage2.1
|
None
|
ERR13291159
|
MDR-TB
|
lineage2.1
|
None
|
ERR13290675
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR29440744
|
HR-TB
|
lineage2.1
|
None
|
SRR28741100
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741112
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741113
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741116
|
MDR-TB
|
lineage2.1
|
None
|
DRR473960
|
Sensitive
|
lineage2.1
|
None
|
SRR28741107
|
MDR-TB
|
lineage2.1
|
None
|
SRR28741102
|
MDR-TB
|
lineage2.1
|
None
|
ERR124652
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR9119326
|
HR-TB
|
lineage2.1
|
None
|
SRR12072597
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR22251409
|
Sensitive
|
lineage2.1
|
None
|
SRR22251459
|
Sensitive
|
lineage2.1;lineage2.2.1;lineage4
|
None
|
SRR12072599
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR29231479
|
RR-TB
|
lineage4.9
|
None
|
SRR29050832
|
Sensitive
|
lineage2.1
|
None
|
SRR11828980
|
MDR-TB
|
lineage2.1
|
None
|
SRR21732682
|
HR-TB
|
lineage2.1
|
None
|
SRR22249793
|
Sensitive
|
lineage2.1
|
None
|
ERR4831974
|
MDR-TB
|
lineage2.1
|
vn
|
SRR5114021
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR10828203
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR13291104
|
MDR-TB
|
lineage2.1
|
None
|
ERR13290764
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR13439912
|
HR-TB
|
lineage2.1
|
None
|
SRR15368709
|
HR-TB
|
lineage2.1
|
None
|
SRR6325456
|
Other
|
lineage2.1
|
us
|
SRR24083615
|
Sensitive
|
lineage2.1
|
None
|
SRR3675465
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR5067580
|
Sensitive
|
lineage2.1
|
vn
|
SRR21690988
|
Sensitive
|
lineage2.1
|
None
|
SRR29096541
|
Other
|
lineage4.9
|
None
|
ERR9786694
|
Other
|
lineage4.1.2.1
|
None
|
SRR10040460
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR19304036
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR26399205
|
Sensitive
|
lineage2.1
|
None
|
ERR7339141
|
Sensitive
|
lineage2.1
|
None
|
ERR7361943
|
Sensitive
|
lineage2.1
|
None
|
SRR14519852
|
Sensitive
|
lineage2.1
|
None
|
SRR21747054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR2704676
|
Sensitive
|
lineage2.1
|
us
|
SRR21747063
|
MDR-TB
|
lineage2.1
|
None
|
SRR5065441
|
Sensitive
|
lineage2.1
|
vn
|
SRR26399168
|
Sensitive
|
lineage2.1
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4818929
|
HR-TB
|
lineage4.9
|
None
|
SRR30180332
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4810741
|
HR-TB
|
La3;lineage2.1;lineage6.3
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5067683
|
HR-TB
|
lineage2.1
|
vn
|
SRR21685332
|
Sensitive
|
lineage2.1
|
None
|
ERR323063
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5709764
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR13291051
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR30182595
|
Sensitive
|
lineage2.1
|
None
|
ERR13291427
|
Sensitive
|
lineage2.1
|
None
|
ERR3273209
|
MDR-TB
|
lineage2.1
|
None
|
ERR031475
|
Sensitive
|
lineage2.1
|
None
|
ERR13290893
|
MDR-TB
|
lineage2.1
|
None
|
SRR29440579
|
Sensitive
|
lineage2.1
|
None
|
ERR3283019
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR7737929
|
MDR-TB
|
lineage2.1
|
None
|
ERR234248
|
Sensitive
|
lineage2.1
|
us
|
SRR11828977
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR20969677
|
HR-TB
|
La3;lineage2
|
None
|
SRR1019178
|
Sensitive
|
lineage2.1
|
None
|
ERR4831546
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
SRR25827687
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4811022
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR11828989
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR772255
|
MDR-TB
|
lineage2.1;lineage4.3.2
|
None
|
SRR26399973
|
Other
|
La3;lineage4.9
|
None
|
SRR5073838
|
Sensitive
|
lineage2.1
|
vn
|
ERR9786682
|
Other
|
lineage4.1.2.1
|
None
|
SRR5837708
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR11662293
|
MDR-TB
|
lineage2.1
|
None
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR5065616
|
Other
|
lineage2.1
|
vn
|
SRR3416776
|
Other
|
lineage2.1
|
None
|
SRR5073637
|
HR-TB
|
lineage2.1
|
vn
|
SRR10341349
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR9117721
|
HR-TB
|
La3;lineage1.1.2
|
None
|
ERR4821053
|
RR-TB
|
lineage3
|
None
|
ERR4828643
|
Sensitive
|
lineage2.1
|
vn
|
ERR181316
|
Sensitive
|
lineage2.1
|
dj
|
SRR16100725
|
Sensitive
|
lineage2.1
|
None
|
ERR13290679
|
Sensitive
|
lineage2.1
|
None
|
SRR28858573
|
Sensitive
|
lineage2.1
|
None
|
SRR3675529
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR22249972
|
Sensitive
|
lineage2.1
|
None
|
ERR768032
|
RR-TB
|
lineage2.1
|
th
|
SRR29051176
|
Other
|
lineage2.1
|
None
|
DRR474009
|
Sensitive
|
lineage2.1
|
None
|
SRR5709934
|
Pre-XDR-TB
|
lineage2.1
|
th
|
DRR474158
|
Sensitive
|
lineage2.1
|
None
|
ERR13290687
|
MDR-TB
|
lineage2.1
|
None
|
ERR13290849
|
MDR-TB
|
lineage2.1
|
None
|
SRR10828191
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR11828962
|
MDR-TB
|
lineage2.1
|
None
|
SRR5074093
|
Sensitive
|
lineage2.1
|
vn
|
SRR30180393
|
MDR-TB
|
lineage2.1
|
None
|
SRR25628614
|
Sensitive
|
lineage2.1
|
None
|
SRR3205959
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR22249459
|
Sensitive
|
lineage2.1
|
None
|
ERR11049274
|
MDR-TB
|
lineage2.1
|
None
|
SRR29050792
|
HR-TB
|
lineage2.1
|
None
|
SRR11828975
|
Pre-XDR-TB
|
lineage2.1
|
th
|
DRR473991
|
Sensitive
|
lineage2.1
|
None
|
SRR5114019
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR21732823
|
Sensitive
|
lineage2.1
|
None
|
SRR5073866
|
Sensitive
|
lineage2.1
|
vn
|
ERR4811590
|
Sensitive
|
lineage2.1
|
cn
|
SRR26399834
|
HR-TB
|
lineage2.1
|
None
|
SRR21747057
|
MDR-TB
|
lineage2.1
|
None
|
SRR10809158
|
Sensitive
|
lineage2.1
|
None
|
SRR18913794
|
Sensitive
|
lineage2.1
|
None
|
ERR4828765
|
HR-TB
|
lineage2.1
|
vn
|
ERR8774471
|
Other
|
lineage2.1
|
None
|
SRR10828183
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR2027263
|
Other
|
lineage4
|
None
|
SRR27450294
|
Sensitive
|
lineage2.1
|
None
|
DRR185119
|
Sensitive
|
lineage2.1
|
vn
|
SRR26399473
|
Sensitive
|
lineage2.1
|
None
|
ERR7737678
|
MDR-TB
|
lineage2.1
|
None
|
SRR5065579
|
Sensitive
|
lineage2.1
|
vn
|
SRR20970022
|
Sensitive
|
lineage2.1
|
None
|
SRR5065487
|
Sensitive
|
lineage2.1
|
vn
|
ERR4828364
|
HR-TB
|
lineage2.1
|
None
|
ERR4828381
|
MDR-TB
|
lineage2.1
|
vn
|
ERR161033
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4830275
|
Sensitive
|
lineage2.1
|
vn
|
SRR5709748
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR11049075
|
Sensitive
|
lineage2.1
|
None
|
ERR4831730
|
HR-TB
|
lineage2.1
|
vn
|
SRR11828969
|
MDR-TB
|
lineage2.1
|
None
|
DRR473714
|
Sensitive
|
lineage2.1
|
None
|
SRR5114020
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR10040392
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR1710067
|
Sensitive
|
lineage2.1
|
cn
|
ERR775761
|
Sensitive
|
lineage2.1
|
th
|
SRR5710027
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR22250136
|
Other
|
lineage2.1
|
None
|
SRR22424898
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR5065563
|
Sensitive
|
lineage2.1
|
vn
|
SRR6153099
|
Sensitive
|
lineage2.1
|
ca
|
SRR21689793
|
MDR-TB
|
lineage2.1
|
None
|
ERR3273195
|
MDR-TB
|
lineage2.1
|
None
|
SRR29464869
|
Sensitive
|
lineage2.1
|
None
|
SRR30180243
|
MDR-TB
|
lineage2.1
|
None
|
ERR11043101
|
Sensitive
|
lineage2.1
|
None
|
ERR4831943
|
Pre-XDR-TB
|
lineage2.1
|
vn
|
SRR5065467
|
Sensitive
|
lineage2.1
|
vn
|
ERR5311089
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR10040174
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR26399309
|
MDR-TB
|
lineage2.1
|
None
|
ERR1035097
|
Pre-XDR-TB
|
lineage2.1
|
vn
|
ERR9119325
|
MDR-TB
|
lineage2.1
|
None
|
ERR7911304
|
MDR-TB
|
lineage2.1
|
vn
|
SRR25206889
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4817731
|
HR-TB
|
lineage4.9
|
None
|
ERR1140782
|
Sensitive
|
lineage2.1
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
ERR4828183
|
Other
|
lineage2.1
|
vn
|
ERR4828248
|
Sensitive
|
lineage2.1
|
vn
|
SRR29050950
|
MDR-TB
|
lineage2.1
|
None
|
SRR5065297
|
Sensitive
|
lineage2.1
|
vn
|
SRR11662182
|
MDR-TB
|
lineage2.1
|
None
|
ERR7911277
|
MDR-TB
|
lineage2.1
|
vn
|
SRR21576631
|
MDR-TB
|
lineage2.1
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR2513708
|
Sensitive
|
lineage2.1
|
None
|
ERR5336148
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR5074068
|
Other
|
lineage2.1
|
vn
|
SRR5074136
|
Sensitive
|
lineage2.1
|
vn
|
SRR7517776
|
Sensitive
|
lineage2.1
|
th
|
SRR11662223
|
MDR-TB
|
lineage2.1
|
None
|
SRR26937040
|
MDR-TB
|
lineage2.1
|
None
|
ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR7911125
|
RR-TB
|
lineage2.1
|
vn
|
ERR13265748
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR1710059
|
Sensitive
|
lineage2.1
|
cn
|
SRR13423582
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR8237370
|
Sensitive
|
lineage2.1
|
None
|
SRR26399189
|
Sensitive
|
lineage2.1
|
None
|
SRR30180462
|
MDR-TB
|
lineage2.1
|
None
|
SRR11715725
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR28868762
|
Sensitive
|
lineage2.1
|
None
|
SRR26112747
|
Sensitive
|
lineage2.1
|
None
|
SRR26399764
|
Sensitive
|
lineage2.1
|
None
|
SRR22250055
|
HR-TB
|
lineage2.1
|
None
|
ERR4832049
|
MDR-TB
|
lineage2.1
|
vn
|
SRR20969866
|
HR-TB
|
lineage2.1
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
DRR188602
|
Sensitive
|
lineage2.1
|
None
|
ERR031469
|
Sensitive
|
lineage2.1
|
None
|
SRR21576688
|
MDR-TB
|
lineage2.1
|
None
|
ERR7737907
|
MDR-TB
|
lineage2.1
|
None
|
SRR28119811
|
Other
|
lineage2.2.1;lineage6.3
|
None
|
SRR28409308
|
Sensitive
|
lineage2.1
|
None
|
DRR473886
|
Sensitive
|
lineage2.1
|
None
|
ERR025881
|
Sensitive
|
lineage2.1
|
None
|
ERR13290738
|
MDR-TB
|
lineage2.1
|
None
|
SRR24083713
|
Sensitive
|
lineage2.1;lineage4.1.2.1
|
None
|
SRR11662439
|
MDR-TB
|
lineage2.1
|
None
|
ERR218154
|
Sensitive
|
lineage2.1
|
None
|
SRR21746995
|
MDR-TB
|
lineage2.1
|
None
|
SRR10809026
|
MDR-TB
|
lineage2.1
|
None
|
SRR5067433
|
HR-TB
|
lineage2.1
|
vn
|
SRR10808856
|
Sensitive
|
lineage2.1
|
None
|
SRR24083714
|
Sensitive
|
lineage2.1
|
None
|
SRR10809108
|
Sensitive
|
lineage2.1
|
None
|
SRR12072598
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR775794
|
MDR-TB
|
lineage2.1
|
th
|
SRR10809073
|
Sensitive
|
lineage2.1
|
None
|
SRR1710070
|
Sensitive
|
lineage2.1
|
cn
|
ERR4815441
|
HR-TB
|
lineage4.9
|
None
|
ERR4811311
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675236
|
Other
|
|
None
|
SRR26399175
|
HR-TB
|
lineage2.1
|
None
|
ERR775784
|
MDR-TB
|
lineage2.1
|
th
|
ERR212121
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
SRR1710069
|
Sensitive
|
lineage2.1
|
cn
|
SRR5709762
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
SRR10185946
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4830262
|
Sensitive
|
lineage2.1
|
vn
|
SRR5065278
|
Sensitive
|
lineage2.1
|
vn
|
SRR11662677
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR28741104
|
MDR-TB
|
lineage2.1
|
None
|
SRR21733227
|
HR-TB
|
lineage2.1
|
None
|
SRR1710065
|
Sensitive
|
lineage2.1
|
cn
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR775766
|
HR-TB
|
lineage2.1
|
th
|
SRR26399943
|
HR-TB
|
lineage2.1
|
None
|
SRR11662669
|
MDR-TB
|
lineage2.1
|
None
|
ERR4816478
|
HR-TB
|
lineage4
|
None
|
SRR5710022
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR5073882
|
Other
|
lineage2.1
|
vn
|
ERR4832052
|
HR-TB
|
lineage2.1
|
vn
|
SRR28119777
|
Other
|
lineage4.9
|
None
|
SRR22250173
|
Sensitive
|
lineage2.1
|
None
|
SRR29050781
|
HR-TB
|
lineage2.1
|
None
|
ERR13290903
|
MDR-TB
|
lineage2.1
|
None
|
SRR26112753
|
Sensitive
|
lineage2.1
|
None
|
ERR9119373
|
Sensitive
|
lineage2.1
|
None
|
ERR4816656
|
Other
|
lineage4.9
|
None
|
ERR9786611
|
HR-TB
|
lineage4.1.3
|
None
|
ERR2517258
|
Sensitive
|
lineage2.1
|
nl
|
SRR21676416
|
Sensitive
|
lineage2.1
|
None
|
SRR15368921
|
Sensitive
|
lineage2.1
|
None
|
SRR1710058
|
Sensitive
|
lineage2.1
|
cn
|
ERR11049648
|
Sensitive
|
lineage2.1
|
None
|
SRR6045519
|
MDR-TB
|
M.canetti;lineage4.9
|
None
|
SRR10808988
|
Sensitive
|
lineage2.1
|
None
|
ERR12328202
|
Sensitive
|
lineage2.1
|
None
|
SRR22249632
|
Other
|
lineage2.1
|
None
|
ERR11081260
|
Sensitive
|
lineage2.1
|
None
|
SRR26399799
|
HR-TB
|
lineage2.1
|
None
|
SRR11662503
|
MDR-TB
|
lineage2.1
|
None
|
SRR14519949
|
Other
|
lineage2.1
|
None
|
ERR9119371
|
Sensitive
|
lineage2.1
|
None
|
ERR1334034
|
Other
|
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3
|
None
|
ERR3273141
|
RR-TB
|
lineage2.1
|
None
|
ERR4832016
|
MDR-TB
|
lineage2.1
|
None
|
ERR3283017
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
|
None
|
ERR552761
|
Other
|
lineage2.1
|
de
|
SRR11662457
|
MDR-TB
|
lineage2.1
|
None
|
ERR4828573
|
Other
|
lineage2.1
|
None
|
SRR11828968
|
MDR-TB
|
lineage2.1
|
None
|
ERR4828569
|
Other
|
lineage2.1
|
vn
|
DRR261044
|
Sensitive
|
lineage2.1
|
None
|
SRR26558642
|
HR-TB
|
lineage2.1
|
None
|
SRR26936963
|
MDR-TB
|
lineage2.1
|
None
|
SRR6046362
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
ERR4820773
|
HR-TB
|
lineage4.9
|
None
|
ERR13290692
|
HR-TB
|
lineage2.1
|
None
|
SRR5067554
|
Other
|
lineage2.1
|
vn
|
SRR10828645
|
MDR-TB
|
lineage2.1
|
None
|
ERR13290725
|
MDR-TB
|
lineage2.1
|
None
|
ERR2503370
|
Sensitive
|
lineage2.1
|
fi
|
ERR2026697
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR14519689
|
Sensitive
|
lineage2.1
|
None
|
ERR13291023
|
MDR-TB
|
lineage2.1
|
None
|
SRR11715717
|
Sensitive
|
lineage2.1
|
None
|
ERR126608
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR11715720
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR11715716
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4832015
|
HR-TB
|
lineage2.1
|
vn
|
ERR538432
|
Sensitive
|
lineage2.1
|
None
|
ERR323040
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675467
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR5073761
|
Sensitive
|
lineage2.1
|
vn
|
SRR6152685
|
Other
|
lineage2.1
|
ca
|
SRR28741119
|
MDR-TB
|
lineage2.1
|
None
|
SRR11828967
|
MDR-TB
|
lineage2.1
|
None
|
ERR4811105
|
HR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR718276
|
Sensitive
|
lineage2.1
|
th
|
SRR21576582
|
MDR-TB
|
lineage2.1
|
None
|
SRR1710072
|
Sensitive
|
lineage2.1
|
cn
|
ERR9786444
|
Sensitive
|
lineage4.8
|
None
|
SRR18911922
|
Sensitive
|
lineage2.1
|
None
|
ERR3273198
|
MDR-TB
|
lineage2.1
|
None
|
SRR11828973
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR3675216
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR11828990
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR11662277
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR6480443
|
Sensitive
|
lineage2.1
|
None
|
SRR10828184
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR29051077
|
Other
|
lineage4.9
|
None
|
ERR4828594
|
Sensitive
|
lineage2.1
|
vn
|
ERR3275732
|
Sensitive
|
lineage2.1
|
nl
|
DRR034421
|
Other
|
lineage2.1
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6046783
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR5709897
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR26399375
|
Sensitive
|
lineage2.1
|
None
|
SRR3675461
|
RR-TB
|
lineage4.9
|
None
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR21689528
|
Other
|
lineage2.1
|
None
|
SRR26159043
|
Other
|
lineage4.9
|
None
|
SRR29017311
|
Sensitive
|
lineage2.1
|
None
|
ERR13285436
|
Other
|
lineage2.1
|
None
|
SRR5709898
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR28741114
|
MDR-TB
|
lineage2.1
|
None
|
ERR4831605
|
MDR-TB
|
lineage2.1
|
vn
|
ERR7911290
|
MDR-TB
|
lineage2.1
|
vn
|
ERR1873492
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
ERR4828247
|
HR-TB
|
lineage2.1
|
vn
|
SRR5065411
|
HR-TB
|
lineage2.1
|
vn
|
SRR13180316
|
HR-TB
|
lineage2.1
|
None
|
SRR5067550
|
Other
|
lineage2.1
|
vn
|
SRR5709822
|
MDR-TB
|
lineage2.1
|
th
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SRR12006591
|
Sensitive
|
lineage2.1
|
None
|
SRR7069733
|
Sensitive
|
lineage2.1
|
None
|
SRR11662530
|
MDR-TB
|
lineage2.1
|
None
|
SRR6458423
|
HR-TB
|
lineage2.2.1
|
None
|
SRR20632799
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR21747001
|
RR-TB
|
lineage2.1
|
None
|
ERR11044724
|
Sensitive
|
lineage2.1
|
None
|
SRR21576561
|
RR-TB
|
lineage2.1
|
None
|
SRR29017284
|
HR-TB
|
lineage2.1
|
None
|
SRR5709925
|
Sensitive
|
lineage2.1
|
th
|
SRR11828976
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR6045399
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR278594
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR13290906
|
MDR-TB
|
lineage2.1
|
None
|
ERR4831969
|
Pre-XDR-TB
|
lineage2.1
|
vn
|
ERR3283044
|
Other
|
lineage4
|
None
|
SRR22251672
|
Other
|
lineage2.1
|
None
|
SRR20969515
|
HR-TB
|
lineage2.1
|
None
|
SRR20969633
|
HR-TB
|
lineage2.1
|
None
|
SRR5065617
|
Sensitive
|
lineage2.1
|
vn
|
SRR5065678
|
Sensitive
|
lineage2.1
|
vn
|
ERR3804169
|
HR-TB
|
lineage4.1.3
|
None
|
ERR751993
|
Sensitive
|
lineage2.1
|
th
|
ERR4800341
|
Other
|
lineage3
|
None
|
SRR11662162
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR6152853
|
Sensitive
|
lineage2.1
|
ca
|
ERR13290828
|
MDR-TB
|
lineage2.1
|
None
|
SRR28170771
|
Sensitive
|
lineage2.1
|
None
|
SRR26399738
|
HR-TB
|
lineage2.1
|
None
|
SRR11828965
|
MDR-TB
|
lineage2.1
|
None
|
ERR775773
|
Sensitive
|
lineage2.1
|
th
|
SRR20969663
|
MDR-TB
|
lineage2.1
|
None
|
SRR21677266
|
Sensitive
|
lineage2.1
|
None
|
ERR4828727
|
Sensitive
|
lineage2.1
|
vn
|
SRR3675449
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR3275582
|
Sensitive
|
lineage2.1
|
nl
|
SRR11828963
|
MDR-TB
|
lineage2.1
|
None
|
SRR3675450
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR5065368
|
Sensitive
|
lineage2.1
|
vn
|
SRR10808634
|
RR-TB
|
lineage2.1
|
None
|
ERR8773679
|
HR-TB
|
lineage2.1
|
None
|
SRR11828979
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR4831344
|
Sensitive
|
lineage2.1
|
de
|
SRR26937071
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
SRR21690953
|
Sensitive
|
lineage2.1
|
None
|
SRR28339298
|
Pre-XDR-TB
|
lineage2.1
|
None
|
DRR130077
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1011503
|
Sensitive
|
lineage2.1
|
None
|
SRR5073921
|
Sensitive
|
lineage2.1
|
vn
|
SRR5073739
|
HR-TB
|
lineage2.1
|
vn
|
SRR26399621
|
Sensitive
|
lineage2.1
|
None
|