Rv0006 - c.1998G>C


Drug resistance types
26 Sensitive 6 RR-TB 42 HR-TB 11 MDR-TB 4 Pre-XDR-TB 3 XDR-TB 117 Other
lineage Counts
lineage Count
lineage2.2.1;lineage3 1
lineage4.9 40
lineage4.3.3 25
lineage2.2.1;lineage6.3 1
lineage4.4.1.1 1
lineage2.1;lineage4.9;lineage6.3 8
La3;lineage4.9 8
lineage4.6.2.2 3
lineage4.3.2 1
La3 2
M.canetti;lineage2.1;lineage4.9 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage2.1;lineage4.9 14
lineage2.2.1 13
lineage4.1.3 2
lineage4.2;lineage4.6.3;lineage4.9 1
lineage2.1 5
lineage4.8 2
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.1.1.3 1
lineage6.1.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 2
lineage4.9;lineage6.3 5
La3;lineage2.1;lineage4.9;lineage6.3 4
20
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage4.8 1
La3;lineage2.1;lineage4.9 2
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage3 3
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage4 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.1.2.1 5
lineage4.1.1.1 1
lineage4.3.4.1 2
lineage4.9;lineage7 1
M.canetti;lineage2.1;lineage6.3 1
La3;lineage2.1;lineage6.3 1
lineage4.3.4.2.1 3
La3;M.canetti;lineage2.2.1 1
lineage2.2 3
lineage2.1;lineage6.3 2
M.canetti;lineage4.9 2
lineage3.1 1
lineage1.1.3.2 1
La3;lineage2 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.7;lineage4.9 2
lineage6.3.1 1
lineage2.2.2 1
La3;lineage1.1.2 1
spoligotype Counts
spoligotype Count
None 209
Geographic prevalence
Country level data for this variant is available for 6 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR14782054 Other lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR6046066 Other lineage4.9 None
SRR25340891 Sensitive lineage4.3.3 None
ERR1063855 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1173400 Other lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR3675248 Other lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR9117805 Other lineage4.3.2 None
SRR1184294 Other lineage4.9 None
SRR1196566 Other lineage4.9 None
SRR1172728 RR-TB La3 None
ERR3797064 Other La3;lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR2229542 Other lineage4.8 None
SRR1180137 RR-TB lineage2.2.1 None
ERR4797464 Sensitive lineage4.3.3 in
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR12416840 MDR-TB lineage4.9 None
SRR1172817 Other La3 None
ERR11465024 Other lineage4.1.1.3 None
ERR9787165 Other lineage6.1.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR9117709 Other None
ERR234659 HR-TB None
SRR25827682 Other None
SRR1172857 Other None
ERR9787197 Other None
SRR3675236 Other None
SRR28119805 Other lineage4.9 None
SRR1196768 MDR-TB None
ERR4817060 Other None
ERR4819051 Sensitive lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4817893 Other La3;lineage4.8 None
SRR1710057 Other lineage2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR22424790 Sensitive lineage4.3.3 None
ERR4817896 HR-TB lineage2.2.1 None
SRR1169194 Other lineage4.9 None
SRR2101049 Sensitive lineage4.3.3 None
SRR22424876 MDR-TB lineage4.3.3 None
ERR702406 Other lineage2.1 None
ERR3283031 Other La3;lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR990545 RR-TB lineage3 None
ERR4799025 Other lineage4.8 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR502912 Other lineage2.2.1 None
SRR26399490 Sensitive lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR26159043 Other lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496472 Other lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR176793 Other lineage4.1.1.1 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR1181289 RR-TB lineage2.2.1 None
ERR3283014 Other La3;lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
SRR6044875 Other lineage4.9 None
ERR4798186 Pre-XDR-TB lineage4.3.3 in
ERR9786694 Other lineage4.1.2.1 None
ERR11466499 Other lineage4.3.4.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR9786601 Other lineage4.1.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR7821163 Other lineage2.2.1 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
ERR9786682 Other lineage4.1.2.1 None
ERR4811493 HR-TB lineage4.9 None
ERR4798418 Sensitive lineage4.3.3 in
ERR736856 HR-TB lineage4.9 None
SRR6325443 Sensitive lineage4.3.3 us
SRR28046021 Sensitive lineage4.3.3 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
ERR9786604 Other None
ERR4815604 Other None
ERR9786843 Other None
SRR6789626 Other None
SRR18213713 HR-TB None
ERR212001 HR-TB None
ERR4816999 Other None
SRR28119777 Other lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR4800341 HR-TB lineage3 None
SRR21732591 Sensitive lineage4.3.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR161034 HR-TB lineage4.3.4.2.1 None
SRR6045010 Sensitive lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1183049 RR-TB lineage2.2 None
SRR6045217 Other lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4818835 Sensitive lineage4.3.3 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4798834 Sensitive lineage4.3.3 in
ERR3283055 HR-TB lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR25340978 Sensitive lineage4.3.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR21733209 Sensitive lineage4.3.3 None
SRR1181020 Other lineage2.2.1 None
SRR3675214 Other lineage4.9 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR6045548 Other lineage4.9 None
ERR4800180 Sensitive lineage4.3.3 None
SRR1184312 Other lineage2.2.1 None
SRR6045526 Other lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR1184346 HR-TB lineage3.1 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
ERR3797070 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1172951 Other lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
SRR21732980 Other lineage4.3.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR3283042 HR-TB lineage4.9 None
ERR7821126 Other lineage1.1.3.2 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR3797046 HR-TB lineage4.9 None
SRR1196546 Other lineage4.9 None
ERR4797588 MDR-TB lineage3 None
SRR3416776 Other lineage2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR294259 Sensitive lineage4.3.3 None
ERR3283018 HR-TB lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR7496509 Other None
ERR9786671 Other None
SRR28045538 Sensitive lineage4.3.3 None
ERR2514692 Other None
SRR28046137 HR-TB lineage4.3.3 None
SRR28045734 Sensitive lineage4.3.3 None
SRR28046033 Sensitive lineage4.3.3 None
ERR4407463 HR-TB None
SRR25340848 Sensitive lineage4.3.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3675549 Other lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR2514821 Other lineage2.2.1 None
ERR3797069 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR18003019 Other lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4814550 Sensitive lineage4.3.3 gb
ERR176549 Other lineage4.3.4.2.1 None
SRR1196677 Other lineage2.2 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR15014726 MDR-TB lineage4.3.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None