Rv0006 - c.1998G>C
Drug resistance types
27 Sensitive
2 RR-TB
82 HR-TB
19 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
89 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 24 |
| lineage4.1.2.1 | 8 |
| lineage4 | 19 |
| 94 | |
| lineage4.6.2.2 | 3 |
| lineage2.2.1 | 14 |
| lineage4.3.3 | 22 |
| lineage2.2 | 7 |
| lineage4.3.4.1 | 2 |
| lineage4.1.1.3 | 1 |
| La1 | 1 |
| lineage4.1.3 | 2 |
| La1.2 | 1 |
| lineage2 | 3 |
| lineage3 | 3 |
| lineage4.6.1.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage1.1.2 | 2 |
| lineage4.3.2 | 1 |
| lineage6.3.1 | 1 |
| lineage6 | 1 |
| lineage4.4.1.1 | 2 |
| lineage3.1 | 2 |
| lineage2.1 | 2 |
| lineage4.5 | 1 |
| lineage4.9;La3 | 1 |
| lineage3;lineage2.2.1 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.8 | 1 |
| lineage4.8;La3 | 1 |
| La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 228 |
Geographic prevalence
Country level data for this variant is available for 6 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2693238 | HR-TB | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6045217 | Other | lineage4 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6046540 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4797464 | Sensitive | lineage4.3.3 | in | ERR4814550 | Sensitive | lineage4.3.3 | gb | ERR4798186 | Pre-XDR-TB | lineage4.3.3 | in | ERR4798834 | Sensitive | lineage4.3.3 | in | ERR4798418 | Sensitive | lineage4.3.3 | in | ERR4831117 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR7535086 | Other | None | SRR6789626 | Other | None | ERR294259 | Sensitive | lineage4.3.3 | None | SRR7496509 | Other | None | ERR502532 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7585435 | Other | lineage4.9 | None | ERR323043 | HR-TB | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR3283028 | Other | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR1063855 | Other | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283014 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3797046 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797015 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797069 | Other | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR5336148 | Other | None | ERR4769427 | Other | La1.2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799025 | Pre-XDR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4811493 | HR-TB | None | ERR4800180 | Sensitive | lineage4.3.3 | None | ERR4810741 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6866410 | Sensitive | None | ERR6358991 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR7821163 | Other | lineage2.2.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | SRR21733209 | Sensitive | lineage4.3.3 | None | ERR736874 | HR-TB | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | SRR21732591 | Sensitive | lineage4.3.3 | None | ERR9117709 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786604 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786843 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR990545 | Other | lineage3 | None | ERR9787197 | Other | None | SRR1172951 | Other | None | SRR1172728 | MDR-TB | None | SRR1172857 | MDR-TB | None | SRR1169194 | Other | None | SRR1172234 | Other | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1173118 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1173153 | HR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173400 | Other | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175090 | Other | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1183049 | Other | lineage2.2 | None | SRR1184372 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196566 | HR-TB | None | SRR12142341 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None | SRR12416824 | HR-TB | None | SRR15014726 | MDR-TB | lineage4.3.3 | None | SRR15368973 | Other | None | SRR14782405 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213887 | Sensitive | lineage4.3.3 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR25827682 | Other | None | SRR20969677 | HR-TB | lineage2 | None | SRR25340891 | Sensitive | lineage4.3.3 | None | SRR22424790 | Sensitive | lineage4.3.3 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR22424876 | MDR-TB | lineage4.3.3 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692791 | Other | lineage4.9 | None | SRR8692818 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR25340848 | Sensitive | lineage4.3.3 | None | SRR25340978 | Sensitive | lineage4.3.3 | None | SRR26159043 | Other | lineage4.9 | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR4815604 | HR-TB | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675236 | HR-TB | None | SRR3675221 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | SRR6325443 | Sensitive | lineage4.3.3 | us | SRR3675311 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | ERR212001 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675572 | Other | None | ERR4817060 | RR-TB | None | SRR3675574 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2 | None | SRR3742665 | HR-TB | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR502912 | Other | lineage2.2.1 | None | SRR7496472 | Other | None | ERR4819051 | Other | lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR4818835 | Sensitive | lineage4.3.3 | None | ERR2514821 | Other | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2514692 | Other | None | ERR4819839 | Sensitive | lineage1.1.2 | None | SRR5341302 | HR-TB | None | SRR2101049 | Sensitive | lineage4.3.3 | None | SRR5341432 | HR-TB | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341333 | HR-TB | None |
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