Rv0407 - c.66A>G
Drug resistance types
64 Sensitive
6 RR-TB
33 HR-TB
11 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
94 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 16 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage1.1.3.2 | 86 |
| 16 | |
| lineage2.1;lineage4.9 | 14 |
| lineage4.6.2.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.2 | 1 |
| lineage4.9;lineage6.3 | 3 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.8 | 2 |
| lineage1.1.2;lineage1.1.3.2 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.2.1 | 7 |
| lineage2.1 | 5 |
| La3;lineage1.1.2 | 1 |
| lineage4.1.2.1 | 5 |
| lineage3.1.1 | 1 |
| La3 | 2 |
| lineage3.1 | 1 |
| La1.2.BCG | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage6.1.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.3 | 2 |
| lineage4.7 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4 | 1 |
| lineage3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.8 | 1 |
| lineage4.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 211 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR8217918 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR8975015 | Sensitive | lineage1.1.3.2 | None | ERR7821103 | HR-TB | lineage1.1.3.2 | None | ERR9117709 | Other | None | SRR1173400 | Other | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR190382 | Sensitive | lineage1.1.3.2 | mw | SAMEA2535315 | Other | lineage1.1.3.2 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | SRR5535821 | Sensitive | lineage1.1.3.2 | None | ERR3797070 | Other | lineage4.9 | None | ERR11252669 | Sensitive | lineage1.1.3.2 | None | ERR11252419 | Sensitive | lineage1.1.3.2 | None | ERR11252508 | Sensitive | lineage1.1.3.2 | None | ERR11252676 | Sensitive | lineage1.1.3.2 | None | ERR11252574 | Sensitive | lineage1.1.3.2 | None | SRR1172857 | Other | None | ERR9787197 | Other | None | ERR11252575 | Sensitive | lineage1.1.3.2 | None | ERR4817060 | Other | None | ERR234659 | Other | None | ERR11811415 | Other | lineage1.1.3.2 | None | ERR11811449 | Sensitive | lineage1.1.3.2 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR11465270 | Sensitive | lineage1.1.3.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR9786604 | Other | None | ERR4818347 | Other | lineage4.1.2 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR18913789 | Sensitive | lineage1.1.3.2 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR13286105 | MDR-TB | lineage1.1.3.2 | None | ERR11811457 | Other | lineage1.1.3.2 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR2660508 | Sensitive | lineage1.1.3.2 | None | ERR161087 | Sensitive | lineage1.1.2;lineage1.1.3.2 | mw | SRR20969677 | HR-TB | La3;lineage2 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR2660446 | Sensitive | lineage1.1.3.2 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR6207288 | HR-TB | lineage1.1.3.2 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9806803 | RR-TB | lineage1.1.3.2 | None | ERR553334 | Other | lineage1.1.3.2 | None | SRR16115876 | Sensitive | lineage1.1.3.2 | None | ERR2660524 | HR-TB | lineage1.1.3.2 | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR7821158 | Sensitive | lineage1.1.3.2 | None | SRR18715435 | Sensitive | lineage4.1.2.1 | None | SRR6789626 | Other | None | ERR895346 | Other | lineage1.1.3.2 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR11465789 | Sensitive | lineage1.1.3.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR11252545 | Sensitive | lineage1.1.3.2 | None | ERR11488587 | RR-TB | lineage1.1.3.2 | None | SRR10315577 | Sensitive | lineage1.1.3.2 | None | SRR7535086 | Other | None | ERR11252719 | Sensitive | lineage1.1.3.2 | None | SRR1172728 | RR-TB | La3 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11488821 | MDR-TB | lineage1.1.3.2 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR502912 | Other | lineage2.2.1 | None | ERR11252722 | Sensitive | lineage1.1.3.2 | None | ERR11252660 | Sensitive | lineage1.1.3.2 | None | ERR11252425 | Sensitive | lineage1.1.3.2 | None | ERR11252539 | Sensitive | lineage1.1.3.2 | None | ERR11252410 | Sensitive | lineage1.1.3.2 | None | SRR6789621 | Other | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR11252629 | Sensitive | lineage1.1.3.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR11775546 | Sensitive | lineage1.1.3.2 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6.1.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR4819932 | Other | lineage4.7 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR10748168 | Other | lineage1.1.3.2 | None | ERR7821178 | Sensitive | lineage1.1.3.2 | None | ERR7821231 | HR-TB | lineage1.1.3.2 | None | ERR2199787 | Sensitive | lineage1.1.3.2 | sz | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR12882486 | Sensitive | lineage1.1.3.2 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR10969195 | Sensitive | lineage1.1.3.2 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR2660434 | Sensitive | lineage1.1.3.2 | None | ERR2660447 | Sensitive | lineage1.1.3.2 | None | ERR2027263 | Other | lineage4 | None | ERR11466400 | Sensitive | lineage1.1.3.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR176781 | Sensitive | lineage1.1.3.2 | None | SRR3675236 | Other | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR6929523 | RR-TB | lineage1.1.3.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR10610128 | RR-TB | lineage1.1.3.2 | None | ERR11488475 | MDR-TB | lineage1.1.3.2 | None | ERR702406 | Other | lineage2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR1172234 | Other | lineage4.9 | None | ERR8975433 | Sensitive | lineage1.1.3.2 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR11488476 | MDR-TB | lineage1.1.3.2 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR7902615 | Sensitive | lineage1.1.3.2 | None | ERR11252601 | Sensitive | lineage1.1.3.2 | None | SRR12882574 | Sensitive | lineage1.1.3.2 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR11252483 | Sensitive | lineage1.1.3.2 | None | ERR11252721 | Sensitive | lineage1.1.3.2 | None | ERR11252681 | Sensitive | lineage1.1.3.2 | None | ERR11252441 | Other | lineage1.1.3.2 | None | SRR1184381 | MDR-TB | None | ERR11811395 | Sensitive | lineage1.1.3.2 | None | ERR11811399 | HR-TB | lineage1.1.3.2 | None | ERR11811452 | Sensitive | lineage1.1.3.2 | None | ERR11811407 | Sensitive | lineage1.1.3.2 | None | ERR11811437 | Sensitive | lineage1.1.3.2 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR11489026 | MDR-TB | lineage1.1.3.2 | None | ERR2660476 | Sensitive | lineage1.1.3.2 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR12142423 | Sensitive | lineage2.2.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR13292453 | Sensitive | lineage1.1.3.2 | None | SRR1196566 | Other | lineage4.9 | None | ERR11252440 | HR-TB | lineage1.1.3.2 | None | ERR11465866 | Sensitive | lineage1.1.3.2 | None | ERR11489065 | MDR-TB | lineage1.1.3.2 | None | ERR212073 | Sensitive | lineage1.1.3.2 | mw | SRR1173778 | Other | lineage4.9 | None | ERR11252501 | Sensitive | lineage1.1.3.2 | None | ERR11811441 | HR-TB | lineage1.1.3.2 | None | SRR3675275 | Other | lineage4.9 | None | ERR2660540 | Sensitive | lineage1.1.3.2 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR11811410 | Sensitive | lineage1.1.3.2 | None | ERR387051 | Other | lineage4.9 | None | ERR11252661 | Sensitive | lineage1.1.3.2 | None | ERR245782 | Sensitive | lineage1.1.3.2 | mw | SRR1710057 | Other | lineage2.1 | None | ERR161088 | Sensitive | lineage1.1.3.2 | mw | SRR12882242 | Sensitive | lineage1.1.3.2 | None | SRR1173218 | Other | lineage4.3.3 | None | ERR7821186 | Sensitive | lineage1.1.3.2 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11488910 | MDR-TB | lineage1.1.3.2 | None | SRR15368973 | Other | lineage4.9 | None | ERR4815604 | Other | None | ERR4816999 | Other | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR2660468 | Sensitive | lineage1.1.3.2 | None | SRR1196546 | Other | lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2200009 | Sensitive | lineage1.1.3.2 | sz | ERR2660449 | Sensitive | lineage1.1.3.2 | None |
|---|
