Rv0529 - c.-237A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
12 Sensitive
4 RR-TB
29 HR-TB
12 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
97 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 34 |
| lineage2.1;lineage4.9 | 12 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| 26 | |
| La3;lineage2.1;lineage4.9 | 2 |
| La2;lineage2.2 | 1 |
| La3;lineage4.9 | 2 |
| La2;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4 | 1 |
| La3;M.canetti | 8 |
| lineage4.9.1 | 1 |
| lineage4.6.1 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.1.3 | 2 |
| lineage6.3.1 | 1 |
| lineage4.8 | 2 |
| lineage3.1.2.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.1 | 2 |
| lineage4.9;lineage6.3 | 7 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.2.1 | 12 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.3.3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.5 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.7 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage5.2 | 2 |
| lineage3 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage2.2.1;lineage3 | 1 |
| La3 | 1 |
| lineage3.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 159 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR4816999 | Other | None | SRR26159043 | Other | lineage4.9 | None | ERR245758 | Other | lineage4.9.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811075 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR29093909 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675236 | Other | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR28119777 | Other | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR9117709 | Other | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR24799293 | MDR-TB | lineage4.5 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184294 | Other | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR29097037 | Other | lineage4.9 | None | ERR9786843 | Other | None | ERR1043163 | Other | La3;M.canetti | None | ERR2514692 | Other | None | ERR9787197 | Other | None | ERR234659 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR7496523 | Other | lineage4.7 | None | SRR1196566 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1196768 | MDR-TB | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1175074 | Other | None | ERR4815604 | Other | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR3675214 | Other | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR736848 | Other | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4800341 | Other | None | SRR29051077 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4811142 | RR-TB | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4811311 | Other | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR990545 | Other | lineage3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR7535086 | Other | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR29050928 | Other | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR1043164 | Other | La3;M.canetti | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1336826 | Sensitive | La3;M.canetti | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR987722 | MDR-TB | None | SRR25827682 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR1336823 | Sensitive | La3;M.canetti | None | SRR1173633 | Other | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR9786604 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None |
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