lineage | Count |
---|---|
lineage9;lineage3.1 | 1 |
lineage4.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.9;La3 | 1 |
151 | |
lineage2.2.1 | 6 |
lineage4.3 | 1 |
lineage4.3.4 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage2.2 | 6 |
lineage4.1;lineage1 | 1 |
lineage3 | 1 |
lineage4 | 4 |
lineage4.1.2.1 | 10 |
lineage1.1 | 1 |
lineage3.1 | 2 |
La2 | 1 |
La1 | 2 |
lineage4.9 | 14 |
La1.8.1 | 2 |
lineage4.1.3 | 2 |
lineage2 | 2 |
lineage3.1.2 | 1 |
lineage4.8 | 1 |
lineage4.3.3 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.8;lineage4.1 | 1 |
lineage4.1.1 | 1 |
lineage2.2.2 | 1 |
lineage4.4.1.1 | 2 |
lineage4.5 | 2 |
spoligotype | Count |
---|---|
None | 226 |
ID | Drug resistance | Lineage | Country iso2 | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR176751 | HR-TB | None | ERR4815604 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675488 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675222 | Other | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | SRR3675236 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675510 | Other | None | SRR3675545 | HR-TB | None | SRR3675311 | Other | None | SRR3675383 | HR-TB | None | SRR3675501 | HR-TB | None | ERR4816999 | Other | None | SRR3675550 | Other | None | ERR212121 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675571 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816585 | Other | lineage2.2 | None | ERR234659 | HR-TB | None | SRR7496472 | Other | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4818615 | Other | None | SRR5341418 | Other | None | ERR2693257 | Other | None | ERR2693231 | Other | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6045519 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6046133 | HR-TB | None | SRR6045053 | Other | None | SRR6046225 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045399 | Other | None | SRR6046299 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046397 | Other | None | ERR323036 | HR-TB | None | ERR4830353 | Other | None | SRR6325444 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046492 | Other | None | SRR6046644 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR278594 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR294248 | HR-TB | None | SRR6789626 | Other | None | ERR4831117 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502532 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323039 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7496517 | Other | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR133986 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR3283017 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797036 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797044 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797061 | Other | None | ERR3797083 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4769452 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798406 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4810741 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR5336148 | Other | None | ERR4811493 | HR-TB | None | ERR6358991 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR6359045 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR702406 | HR-TB | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR736874 | HR-TB | None | ERR702404 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9117709 | HR-TB | None | ERR9786604 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787197 | Other | None | ERR9786843 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1172857 | MDR-TB | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172951 | Other | None | SRR1173363 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173400 | Other | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1183049 | Other | lineage2.2 | None | SRR1184381 | MDR-TB | None | SRR12416824 | HR-TB | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1196546 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR1640750 | HR-TB | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None |
---|