Rv0701 - c.21C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
2 RR-TB
35 HR-TB
9 MDR-TB
2 Pre-XDR-TB
3 XDR-TB
40 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 6 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9 | 26 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La2;lineage2.2 | 1 |
| La1.7;lineage4.9 | 9 |
| lineage1;lineage4.9 | 1 |
| lineage4.3.4 | 2 |
| lineage3 | 2 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage4.9 | 5 |
| La2;lineage4.9;lineage9 | 1 |
| lineage2.2.1 | 2 |
| lineage4.2.2 | 1 |
| 4 | |
| La1.7;M.canetti;lineage4.9 | 4 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La2;lineage4.9 | 2 |
| La1.7 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.9;lineage6.3 | 2 |
| La1.8.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4 | 1 |
| lineage3.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 96 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1167384 | Other | La3;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR400529 | Other | lineage3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR3797085 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR22424731 | MDR-TB | lineage4.2.2 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9786843 | Other | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | ERR176751 | Other | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR6866807 | Other | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR161037 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR9786525 | Other | lineage4 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR212001 | HR-TB | None | ERR212033 | Other | lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None |
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