Rv0006 - c.1446A>G
Drug resistance types
16 Sensitive
3 RR-TB
153 HR-TB
5 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
83 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 1 |
| 135 | |
| lineage4.1.1 | 3 |
| lineage4.9 | 24 |
| lineage4 | 12 |
| lineage2.2.1 | 11 |
| La1.8.1 | 1 |
| lineage4.1 | 2 |
| lineage3 | 4 |
| lineage4.4.1.1 | 2 |
| lineage4.1.2.1 | 16 |
| lineage4.3.3 | 4 |
| lineage1.1 | 1 |
| lineage3.1 | 3 |
| lineage2.2 | 5 |
| La2 | 1 |
| lineage4.7 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.1.3 | 2 |
| lineage6.1.1 | 2 |
| La1.2 | 2 |
| lineage4.8 | 3 |
| lineage4.8;La3 | 1 |
| lineage3.1.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.3.2 | 2 |
| lineage1.1.2 | 1 |
| lineage4.8;lineage4.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage6 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.2.1.2 | 2 |
| La3 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.5 | 2 |
| lineage2 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage4.9;La3 | 1 |
| lineage4.9;La1 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 265 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3742665 | HR-TB | None | ERR4816656 | HR-TB | None | SRR5341333 | HR-TB | None | SRR7496472 | Other | None | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818929 | HR-TB | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693239 | HR-TB | None | SRR5341470 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR4821053 | Other | lineage3 | None | SRR6045526 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045555 | HR-TB | None | ERR278594 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6046046 | Other | None | SRR6045053 | Other | None | SRR6045327 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046397 | Other | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046540 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6325442 | HR-TB | None | ERR294266 | HR-TB | None | ERR294248 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6789626 | Other | None | ERR323036 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323038 | HR-TB | None | SRR7496517 | Other | None | SRR7496509 | Other | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR323039 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1063858 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034634 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063859 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR5336148 | Other | None | ERR323115 | Sensitive | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3797069 | Other | None | ERR3797071 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797086 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4769450 | HR-TB | None | ERR387051 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4797493 | Sensitive | lineage4.1.1 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4810741 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4800341 | Other | lineage3 | None | ERR6358837 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866547 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR736865 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736874 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119669 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786604 | Other | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787197 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1169306 | Other | None | SRR1172310 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1172234 | Other | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1174897 | HR-TB | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184380 | HR-TB | None | SRR1184294 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR15316066 | Sensitive | lineage4.5 | None | SRR1640750 | HR-TB | None | SRR17658565 | Other | lineage3 | None | SRR15368973 | Other | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR23961542 | Other | lineage4.9;La1 | None | SRR20970016 | Other | lineage2.2 | None | SRR23961549 | Other | La1.2 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176779 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675236 | HR-TB | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675383 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675311 | Other | None | ERR176643 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212033 | HR-TB | None | ERR212001 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675571 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None |
|---|
