lineage | Count |
---|---|
84 | |
lineage4.1.3 | 2 |
lineage3.1.2 | 2 |
lineage4 | 28 |
La1 | 2 |
lineage4.3.4 | 1 |
lineage4.1.2.1 | 7 |
lineage4.6.2.2 | 4 |
lineage2.2 | 3 |
lineage1.1.3.1 | 1 |
lineage1.1.2 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage6.3.1 | 1 |
La3 | 1 |
lineage2.2.1 | 3 |
lineage4.9 | 6 |
lineage1.1.1 | 1 |
lineage4.5 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage2.1 | 1 |
La1.8.1 | 1 |
lineage4.1.1.2 | 1 |
La2 | 1 |
spoligotype | Count |
---|---|
None | 156 |
ID | Drug resistance | Lineage | Country iso2 | ERR3797036 | HR-TB | None | ERR3797014 | Other | None | ERR3797043 | HR-TB | None | ERR3797017 | Other | None | ERR3797061 | Other | None | ERR3797044 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797069 | Other | None | ERR4407463 | HR-TB | None | ERR4797096 | Pre-XDR-TB | lineage3.1.2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4797264 | Sensitive | None | ERR4798262 | HR-TB | La1 | None | ERR4811142 | MDR-TB | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR5336148 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR6358991 | HR-TB | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736865 | HR-TB | None | ERR736874 | HR-TB | None | ERR736867 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR751326 | Sensitive | lineage4 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR9786604 | Other | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786843 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787197 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR10808805 | Sensitive | None | SRR10808399 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1169194 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1172728 | MDR-TB | None | SRR1169249 | Other | La3 | None | SRR1172310 | HR-TB | None | SRR1173153 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1174897 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR18911986 | HR-TB | lineage4.1.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR16115868 | HR-TB | lineage4.1.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR21736950 | Sensitive | lineage4.1.2.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675221 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675234 | Other | None | SRR3675510 | Other | None | ERR181824 | HR-TB | lineage4 | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR176740 | HR-TB | None | ERR176751 | HR-TB | None | ERR212001 | HR-TB | None | ERR212033 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675572 | Other | None | ERR4816466 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | SRR5341373 | HR-TB | lineage4 | None | SRR3742665 | HR-TB | None | SRR7496472 | Other | None | SRR5341366 | Sensitive | lineage4 | None | SRR3675571 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR234659 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | ERR2693231 | Other | None | SRR5341333 | HR-TB | None | SRR5341469 | Other | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341467 | Other | lineage4 | None | ERR2693254 | Other | None | ERR2693230 | Other | None | SRR6046594 | HR-TB | lineage4 | None | ERR2693257 | Other | None | SRR6045555 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6046152 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6982407 | MDR-TB | lineage2.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6511621 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR502532 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR294266 | HR-TB | None | SRR7496509 | Other | None | ERR323053 | HR-TB | None | ERR323045 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323043 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1063896 | Sensitive | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR3283027 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283024 | Other | None | ERR3283058 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None |
---|