Rv1173 - c.882C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
85 Sensitive
2 RR-TB
19 HR-TB
5 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
16 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.1.2.1 | 86 |
| La3;lineage4.9 | 3 |
| lineage4.4.2 | 6 |
| lineage4.9 | 8 |
| lineage4.2;lineage4.9 | 3 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage2.2.1 | 2 |
| lineage3.1.2.2 | 1 |
| 2 | |
| lineage3 | 2 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| lineage1.2.1.2.1;lineage2.2.1 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 128 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29440927 | Sensitive | lineage1.2.1.2.1 | None | SRR14519716 | Sensitive | lineage1.2.1.2.1 | None | ERR9125368 | Sensitive | lineage1.2.1.2.1 | None | SRR1173643 | Sensitive | lineage1.2.1.2.1 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR11050289 | Sensitive | lineage1.2.1.2.1 | None | SRR29124308 | HR-TB | lineage1.2.1.2.1 | None | SRR22249634 | Sensitive | lineage1.2.1.2.1 | None | ERR9124999 | Sensitive | lineage4.4.2 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR13290072 | Sensitive | lineage1.2.1.2.1 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR11044436 | Sensitive | lineage1.2.1.2.1 | None | ERR6336798 | Sensitive | lineage1.2.1.2.1 | None | ERR6336719 | Sensitive | lineage1.2.1.2.1 | None | ERR6336803 | Sensitive | lineage1.2.1.2.1 | None | SRR12006616 | Sensitive | lineage1.2.1.2.1 | None | ERR11050892 | HR-TB | lineage1.2.1.2.1 | None | SRR16089907 | Sensitive | lineage1.2.1.2.1 | None | ERR4817010 | Sensitive | lineage1.2.1.2.1 | None | SRR6045526 | Other | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR28868681 | HR-TB | lineage1.2.1.2.1 | None | SRR27450353 | Sensitive | lineage1.2.1.2.1 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR6358991 | HR-TB | None | SRR27450315 | Sensitive | lineage1.2.1.2.1 | None | SRR16058343 | HR-TB | lineage1.2.1.2.1 | None | ERR9896144 | Other | lineage3 | None | SRR26112241 | Sensitive | lineage1.2.1.2.1 | None | SRR30336522 | Sensitive | lineage1.2.1.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR30182306 | Sensitive | lineage1.2.1.2.1 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR14520004 | HR-TB | lineage1.2.1.2.1 | None | SRR12006532 | Sensitive | lineage1.2.1.2.1 | None | SRR12006653 | Sensitive | lineage1.2.1.2.1 | None | SRR1573724 | Sensitive | lineage4.4.2 | None | SRR1172977 | Sensitive | lineage1.2.1.2.1 | None | SRR22251358 | Sensitive | lineage1.2.1.2.1 | None | SRR16058504 | HR-TB | lineage1.2.1.2.1 | None | SRR6153237 | Sensitive | lineage1.2.1.2.1 | ca | ERR2514692 | Other | None | SRR12006709 | Sensitive | lineage1.2.1.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR2517270 | Sensitive | lineage1.2.1.2.1 | nl | SRR1573710 | Sensitive | lineage4.4.2 | None | SRR22250118 | Sensitive | lineage1.2.1.2.1 | None | SRR1573705 | Sensitive | lineage4.4.2 | None | SRR16058463 | Sensitive | lineage1.2.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR3797029 | Other | lineage4.9 | None | SRR1175026 | Sensitive | lineage1.2.1.2.1;lineage2.2.1 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR12006610 | Sensitive | lineage1.2.1.2.1 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR21690338 | Sensitive | lineage1.2.1.2.1 | None | ERR9125497 | Sensitive | lineage1.2.1.2.1 | None | ERR3256264 | MDR-TB | lineage1.2.1.2.1 | ph | ERR9125859 | Sensitive | lineage1.2.1.2.1 | None | ERR3256270 | Pre-XDR-TB | lineage1.2.1.2.1 | ph | ERR7902692 | Sensitive | lineage1.2.1.2.1 | None | SRR21713557 | Sensitive | lineage1.2.1.2.1 | None | SRR22251768 | Sensitive | lineage1.2.1.2.1 | None | SRR16058649 | Sensitive | lineage1.2.1.2.1 | None | SRR22251520 | Sensitive | lineage1.2.1.2.1 | None | SRR13591413 | Sensitive | lineage1.2.1.2.1 | None | ERR3275373 | Sensitive | lineage1.2.1.2.1 | nl | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR9124969 | Sensitive | lineage4.4.2 | None | SRR29096672 | Sensitive | lineage1.2.1.2.1 | None | SRR12416843 | MDR-TB | lineage1.2.1.2.1 | None | ERR6336806 | Sensitive | lineage1.2.1.2.1 | None | SRR3675248 | Other | lineage4.9 | None | ERR9125394 | HR-TB | lineage1.2.1.2.1 | None | ERR9124968 | Sensitive | lineage4.4.2 | None | SRR13591418 | Sensitive | lineage1.2.1.2.1 | None | SRR12006573 | Sensitive | lineage1.2.1.2.1 | None | SRR12006694 | Sensitive | lineage1.2.1.2.1 | None | SRR12006620 | Sensitive | lineage1.2.1.2.1 | None | SRR21732532 | Sensitive | lineage1.2.1.2.1 | None | ERR9125869 | Sensitive | lineage1.2.1.2.1 | None | SRR28868602 | Sensitive | lineage1.2.1.2.1 | None | SRR21732531 | Sensitive | lineage1.2.1.2.1 | None | SRR22251252 | Sensitive | lineage1.2.1.2.1 | None | SRR12006613 | Sensitive | lineage1.2.1.2.1 | None | SRR21732439 | Sensitive | lineage1.2.1.2.1 | None | SRR12006565 | Sensitive | lineage1.2.1.2.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR14519850 | Sensitive | lineage1.2.1.2.1 | None | SRR12006514 | Sensitive | lineage1.2.1.2.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SAMN02599055 | Sensitive | lineage1.2.1.2.1 | in | SRR22251801 | Sensitive | lineage1.2.1.2.1 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR12882755 | Sensitive | lineage1.2.1.2.1 | None | SRR26056430 | Sensitive | lineage1.2.1.2.1 | None | ERR9125377 | HR-TB | lineage1.2.1.2.1 | None | SRR1172934 | Sensitive | lineage1.2.1.2.1;lineage2.2.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR22249894 | Sensitive | lineage1.2.1.2.1 | None | SRR16058475 | Sensitive | lineage1.2.1.2.1 | None | SRR12006574 | Sensitive | lineage1.2.1.2.1 | None | SRR12006541 | Sensitive | lineage1.2.1.2.1 | None | ERR13291505 | Sensitive | lineage1.2.1.2.1 | None | SRR12006623 | Sensitive | lineage1.2.1.2.1 | None | ERR2446359 | Sensitive | lineage1.2.1.2.1 | nl | SRR1169249 | Other | lineage4.9 | None | SRR12006658 | Sensitive | lineage1.2.1.2.1 | None | SRR12882756 | Sensitive | lineage1.2.1.2.1 | None | ERR4798504 | RR-TB | lineage3 | None | SRR12006641 | Sensitive | lineage1.2.1.2.1 | None | SRR29440924 | Sensitive | lineage1.2.1.2.1 | None | SRR16058514 | Sensitive | lineage1.2.1.2.1 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR176751 | Other | lineage4.9 | None | SRR12006619 | Sensitive | lineage1.2.1.2.1 | None | SRR29440767 | Sensitive | lineage1.2.1.2.1 | None | SRR22249374 | Sensitive | lineage1.2.1.2.1 | None | SRR6152683 | Sensitive | lineage1.2.1.2.1 | ca | ERR212033 | Other | lineage4.9 | None |
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