Rv0006 - c.1788G>C


Drug resistance types
20 Sensitive 5 RR-TB 65 HR-TB 21 MDR-TB 2 Pre-XDR-TB 3 XDR-TB 157 Other
lineage Counts
lineage Count
lineage2.2.1 13
La1;lineage4.9 1
lineage4.2;lineage4.9 3
lineage4.9 53
M.canetti;lineage2.2 2
lineage4.9;lineage7 2
lineage4.3.2;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9 1
M.canetti;lineage4.6.4;lineage4.9 1
lineage4.9;lineage6.3 8
lineage2.1;lineage4.9 15
lineage4.1.2.1 11
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage2.1;lineage4.9;lineage6.3 10
La3;lineage2.1;lineage4.9;lineage6.3 4
La3;lineage4.9 13
lineage4.8 3
lineage3.1;lineage9 1
lineage2.2.1.2;lineage7 1
lineage4.5 1
16
lineage3.1.2.1;lineage3.1.2.2 1
La3;lineage2 1
La3;M.canetti;lineage2.2.1 1
La3;lineage2.1;lineage4.9 2
La1.7;lineage4.9;lineage7 2
La1.6;La3;M.canetti;lineage4.2.2 1
lineage4.6.3;lineage4.9 3
La1.7;lineage4.9 5
lineage4.6.1.1 3
M.canetti;lineage4.9 1
lineage2.2.2 1
La1.2;La1.8.1 1
La1.7;lineage3.1;lineage4 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;lineage4.3.4 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage4.1.1.1 1
lineage5.2 2
La1.7.1;La1.7.X-unk4;lineage7 1
La3;lineage4.8 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
M.canetti;lineage4.2 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.1.1.3 2
lineage2.2.2;lineage4 1
La1.7;M.canetti;lineage4.9 2
lineage1;lineage4.9 1
La1.2.BCG;La1.8.1 1
M.canetti;lineage4.2;lineage4.9 1
lineage6.1.1 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
M.canetti;lineage4.9;lineage9 1
lineage6.3.1 1
La3;lineage2.2.1 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage2.1;lineage4.9 2
La1.7.1 1
lineage2.2 4
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La1.7 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.3.2.1 1
lineage2.2.1;lineage6.3 1
lineage3 2
lineage4.9;lineage9 2
lineage4.2;lineage4.8.1;lineage4.9 2
M.canetti;lineage1 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage2.1;lineage6.3 2
lineage2.1 3
lineage4.6.2.2 1
La1.7;lineage4.2 1
lineage2.2.1.1 1
La1.2.BCG 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.6.4;lineage4.9 1
lineage4.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage4.3.3 1
lineage6.1.3 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
M.canetti;lineage2.2.2;lineage6.2 2
La3;lineage1.1.2 1
La2;lineage4.9 1
La3;lineage2.2.2 1
lineage4 1
La1.7;lineage4.3.4.1 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3.1.2.2 1
La2;lineage4.9;lineage9 1
lineage4.1.3 2
La3 1
lineage4.4.1.2 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.3.4.2.1 1
spoligotype Counts
spoligotype Count
None 273
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4814352 Other lineage2.2.1 None
ERR4769497 Other La1;lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR1180226 HR-TB lineage4.9 None
SRR6832787 Sensitive lineage2.2.1 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR4819781 Other lineage2.2.1 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR3675457 Other lineage4.9 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
SRR3675586 Other M.canetti;lineage4.6.4;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR181744 HR-TB La3;lineage4.9 None
ERR9786569 Other lineage4.8 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR29016780 Other lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
SRR18213713 HR-TB None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR20969677 HR-TB La3;lineage2 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR18003019 Other lineage2.2.1 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR987765 Sensitive lineage4.6.1.1 None
SRR3675455 Sensitive lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR1184312 Other lineage2.2.1 None
SRR5341330 Other lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR3283014 Sensitive La3;lineage4.9 None
SRR7240033 Other La1.2;La1.8.1 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR6789626 Other None
ERR3797063 Sensitive La3;lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR161037 Other lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR29096150 Other lineage4.9 None
SRR3675236 Other None
ERR176793 Other lineage4.1.1.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1165699 Other lineage4.9 None
SRR3675387 Other lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR4812155 Other lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR9117709 Other None
SRR14782405 HR-TB lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR12416840 MDR-TB lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR12015083 Other La3;lineage4.8 None
SRR6044819 Sensitive lineage4.9 None
ERR2229542 Other lineage4.8 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4769452 Other lineage4.9 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR2041725 MDR-TB lineage4.1.2.1 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR6359082 Other lineage4.9 None
SRR6046485 Other lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR1184381 MDR-TB None
SRR3675221 Other lineage4.9 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
ERR2514692 Other None
SRR25827682 Other None
SRR6789621 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR11465024 Other lineage4.1.1.3 None
SRR29093105 Other lineage2.2.2;lineage4 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR6045555 Other lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR29096410 Other lineage4.9 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR1199132 Sensitive lineage4.6.1.1 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR9787014 Other lineage6.1.1 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR369151 Other lineage4.9 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR3797048 Other La3;lineage4.9 None
SRR1196677 Other lineage2.2 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR20969731 Other lineage2.2.1 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
ERR4830353 Other La1.7 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR12708407 HR-TB lineage4.3.2.1 None
ERR4820335 Other lineage4.1.2.1 None
SRR3675267 Other La1.7;lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR3283031 Sensitive La3;lineage4.9 None
ERR2446566 Other lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4816999 Other None
ERR4798504 RR-TB lineage3 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR2041726 MDR-TB lineage4.1.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR6046564 Sensitive lineage4.9 None
ERR4800341 Other lineage3 None
SRR28119777 Other lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR3675549 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR1173400 Other lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1180172 Other lineage2.2.1 None
ERR176751 Other lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR3675488 Other La1.7;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
ERR9786645 Other lineage4.6.2.2 None
SRR23961559 Other La1.7;lineage4.2 None
SRR7496472 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR4798262 HR-TB La1.2.BCG None
ERR3804155 Other lineage4.1.2.1 None
SRR11662690 HR-TB lineage4.9 None
ERR3797070 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR9119500 MDR-TB lineage5.2 None
ERR9786843 Other None
SRR3675390 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
SRR1172857 Other None
ERR9787197 Other None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR9786421 Other lineage4.1.2.1 None
ERR4188322 Other lineage4.6.4;lineage4.9 None
ERR9786440 Other lineage4.1 None
ERR9786604 Other None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR21732980 Other lineage4.3.3 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
ERR9787165 Other lineage6.1.3 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
SRR29097026 Other lineage4.9 None
ERR4811030 Sensitive lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR1172310 HR-TB lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496517 Other None
SRR20969708 HR-TB lineage2.2 None
SRR6046046 Other lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
ERR4799547 HR-TB lineage2.2.1 None
ERR13245558 MDR-TB La3;lineage2.2.2 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4799025 Other lineage4.8 None
SRR5341345 Sensitive lineage4.9 None
SRR15368973 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR11465802 Other La1.7;lineage4.3.4.1 None
SRR6045219 HR-TB lineage4.9 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR3675248 Other lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR11465025 Other lineage4.1.1.3 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4816466 HR-TB lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR702406 Other lineage2.1 None
ERR9786611 HR-TB lineage4.1.3 None
SRR1172817 Other La3 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR7496509 Other None
ERR3797046 HR-TB lineage4.9 None
SRR29017461 Other La3;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR3799304 Other lineage6.1.1 None
ERR4799513 HR-TB lineage2.2 None
SRR1183111 HR-TB lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR11465511 Other lineage4.3.4.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1183144 Other lineage2.2.1 None
ERR3283057 Sensitive La3;lineage4.9 None
SRR20970016 Other lineage2.2 None