Rv0001 - c.819C>T


Drug resistance types
6 Sensitive 7 RR-TB 32 HR-TB 21 MDR-TB 1 Pre-XDR-TB 2 XDR-TB 112 Other
lineage Counts
lineage Count
10
lineage4.9 59
La3;lineage2.1;lineage6.3 1
lineage4.9;lineage6.3 8
lineage2.2.1 9
La3;lineage4.8 1
lineage2.1;lineage4.9;lineage6.3 9
lineage2.1;lineage4.9 11
lineage2.2 1
La1.7.X-unk4;lineage4.9 1
lineage2.2.2 1
La3;lineage4.9 1
La3;lineage1.1.2 1
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage3.1.2.1;lineage3.1.2.2 1
lineage4.9;lineage9 3
M.canetti;lineage2.2.2;lineage6.2 2
M.canetti;lineage4.9 1
lineage3.1.2.2 1
lineage4.6.3;lineage4.9 2
M.canetti;lineage4.2;lineage4.9 1
lineage4.6.2.2 3
La1.7;M.canetti;lineage4.9 2
La2;lineage4.9 1
La3;lineage2 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.1;lineage4.9 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage3 3
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage2.1;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage2.1 3
lineage4 2
lineage4.1.2.1 3
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.1.1.1 2
lineage4.3.2;lineage4.9 1
lineage4.2;lineage4.9 1
M.canetti;lineage4.9;lineage9 1
M.canetti;lineage2.2 2
lineage1.1.2 1
lineage6.3.1 1
M.canetti;lineage2.1;lineage4.9 2
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage2.2.1;lineage6.3 1
lineage4.1.3 2
M.canetti;lineage1 1
La2;lineage4.9;lineage9 1
lineage1.2.1.2 1
La3 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.7;lineage4.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 181
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR234659 HR-TB None
ERR11252736 Other lineage4.9 None
SRR18213713 HR-TB None
ERR9787197 Other None
SRR3675236 Other None
ERR349300 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4817893 Other La3;lineage4.8 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR363499 Other lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1183049 RR-TB lineage2.2 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR18003019 Other lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR363506 Sensitive lineage4.9 None
SRR1172310 MDR-TB lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR987729 MDR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR373946 Other lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR6045399 Other M.canetti;lineage4.9 None
SRR6789621 Other lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR3675248 Other lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR349299 Other lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR349264 Other lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR363498 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR323039 MDR-TB La2;lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR363490 Other lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR473332 Other lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR363447 Other lineage4.9 None
SRR10808730 Other lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR1180137 RR-TB lineage2.2.1 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR12416840 MDR-TB lineage4.9 None
ERR4798431 Other lineage4.1;lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
SRR7496509 Other None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
ERR9117709 Other None
ERR369162 Other lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR13423649 Other lineage2.2.1 None
ERR369158 Other lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4817896 HR-TB lineage2.2.1 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR4798504 RR-TB lineage3 None
ERR363474 Sensitive lineage4.9 None
ERR702406 Other lineage2.1 None
ERR3283044 Other lineage4 None
ERR4799547 HR-TB lineage2.2.1 None
SRR6045555 Other lineage4.9 None
SRR15368973 Other lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR349265 Other lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR11662694 Other lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR9786986 HR-TB lineage4.1.2.1 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
SRR6045371 Other lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR369160 Sensitive lineage4.9 None
ERR363445 Other lineage4.9 None
ERR363502 Other lineage4.9 None
ERR363453 Other lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR373947 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675311 Other lineage4.9 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR7131023 Other lineage4.1.2.1 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR369159 Other lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR363446 Other lineage4.9 None
ERR9786843 Other None
SRR6789626 Other None
ERR2514692 Other None
SRR28119805 Other lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR363449 Other lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR373945 Other lineage4.9 None
SRR25827687 MDR-TB lineage1.1.2 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR9787139 Other lineage6.3.1 None
ERR363421 Other lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR1180226 HR-TB lineage4.9 None
ERR369163 Other lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
SRR6046066 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR363426 Sensitive lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR6046897 Sensitive lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR15014655 Other M.canetti;lineage1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR6045706 Other lineage4.9 None
SRR12006550 Other lineage1.2.1.2 None
SRR1165699 Other lineage4.9 None
ERR176751 HR-TB lineage4.9 None
SRR1172728 RR-TB La3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR363509 Sensitive lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1196546 Other lineage4.9 None
ERR4797588 MDR-TB lineage3 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR23961559 Other La1.7;lineage4.2 None
ERR363500 Other lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR6045503 Other lineage4.9 None
ERR349266 Other lineage4.9 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR11252664 Other lineage2.2.1 None
ERR11252558 Other lineage4.6.3;lineage4.9 None