Rv0001 - c.819C>T
Drug resistance types
6 Sensitive
7 RR-TB
32 HR-TB
21 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
112 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 2 |
| lineage2.2.1 | 9 |
| lineage4.9 | 59 |
| lineage4.9;lineage6.3 | 8 |
| lineage2.1 | 3 |
| lineage2.1;lineage4.9 | 11 |
| lineage4.1.2.1 | 3 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;lineage2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| 10 | |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.8 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.9;lineage9 | 3 |
| lineage4.6.2.2 | 3 |
| M.canetti;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| lineage1.2.1.2 | 1 |
| lineage3 | 3 |
| La1.7;lineage4.2 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage1.1.2 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage2.2.2 | 1 |
| La3;lineage1.1.2 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage6.3.1 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 181 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283044 | Other | lineage4 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR369163 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR6046066 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR1165699 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR363490 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR363447 | Other | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045503 | Other | lineage4.9 | None | ERR349266 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR369159 | Other | lineage4.9 | None | ERR363446 | Other | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR9117709 | Other | None | SRR6789626 | Other | None | ERR234659 | HR-TB | None | SRR18213713 | HR-TB | None | ERR369162 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR369158 | Other | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR702406 | Other | lineage2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR15368973 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR373946 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675221 | Other | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | ERR176751 | HR-TB | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR363500 | Other | lineage4.9 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9787197 | Other | None | SRR3675236 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR363449 | Other | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR363499 | Other | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR6045555 | Other | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR349265 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR11662694 | Other | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR3675248 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR349264 | Other | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR363498 | Other | lineage4.9 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR6045706 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR363453 | Other | lineage4.9 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1180137 | RR-TB | lineage2.2.1 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR9786604 | Other | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR9786843 | Other | None | ERR11252736 | Other | lineage4.9 | None | ERR2514692 | Other | None | ERR349300 | Other | lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR373945 | Other | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR13423649 | Other | lineage2.2.1 | None | ERR363421 | Other | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None |
|---|
