Rv0001 - c.672T>C


Drug resistance types
8 Sensitive 20 RR-TB 46 HR-TB 76 MDR-TB 3 Pre-XDR-TB 2 XDR-TB 80 Other
lineage Counts
lineage Count
M.canetti;lineage2.1;lineage4.9 20
lineage2.1;lineage4.9;lineage6.3 10
lineage2.1 3
lineage2.1;lineage4.9 14
La1.8.1 1
La3;M.canetti;lineage2.1;lineage4.9 7
lineage1.2.2.2 5
lineage4.9 35
La3;lineage4.9 10
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage2.1;lineage4.1.4;lineage4.9 1
lineage4.6.3;lineage4.9 1
La1.7;M.canetti;lineage4.9 4
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage4.9;lineage6.3 3
La1.7;lineage4.9 6
lineage4.3.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
M.canetti;lineage2.1;lineage6.3 2
lineage2.2.1 5
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.9;lineage9 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
La1.7.1 2
La3;M.canetti;lineage3.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4 1
13
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.2 2
M.canetti;lineage4.9 3
lineage2.1;lineage6.3 2
lineage2.2.2 1
La2;lineage4.9 1
lineage4.1.3 2
lineage4.6.2.2 2
lineage3 4
M.canetti;lineage1 1
lineage4.1.1.1 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
La3 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;lineage4 1
La1;lineage4.9 1
La1.2.BCG 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage2.2;lineage6.3 1
M.canetti;lineage2.1;lineage4 1
La3;M.canetti;lineage2.2.1 1
La3;lineage2.1;lineage4.9 2
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
La1.6;La3;M.canetti;lineage4.2.2 1
La3;M.canetti;lineage2.1;lineage3.1 1
La3;lineage1.1.2 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
lineage4.3.4.2.1 1
La1.2.BCG;La1.8.1 1
lineage4.1.2.1 1
lineage2.1;lineage4.3.2;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage4.9;lineage7 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La3;lineage2 1
M.canetti;lineage2.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1.7;lineage4.9;lineage7 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage4.6.1.1 1
spoligotype Counts
spoligotype Count
None 235
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR3797016 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR3797023 MDR-TB La1.8.1 None
ERR3283016 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046047 Sensitive lineage1.2.2.2 gb
SRR6046133 HR-TB lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR3675486 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR3797063 Other La3;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR5311096 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR7496472 Other lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR9117805 Other lineage4.3.2 None
ERR3797070 Other lineage4.9 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR108471 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR6044815 RR-TB lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 RR-TB lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675311 Other lineage4.9 None
SRR6045952 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR2513032 Sensitive lineage1.2.2.2 gb
ERR5311083 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
SRR7240492 MDR-TB La1.7.1 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR3675464 MDR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR11662690 HR-TB lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR6045053 Other lineage4 None
SRR3675572 Other None
ERR9786671 Other None
ERR9786604 Other None
ERR9786843 Other None
SRR1640750 RR-TB None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR3675236 Other None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6046046 Other lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR3675506 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR386953 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675461 RR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR4816470 HR-TB lineage3 None
SRR15014655 Other M.canetti;lineage1 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR176793 Other lineage4.1.1.1 None
ERR2446566 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR6358837 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1172728 RR-TB La3 None
SRR8217918 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR13861400 Other lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6046485 Other lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR3675568 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR3283028 Other La3;lineage4 None
ERR11252612 Other La3;lineage4.9 None
ERR9787197 Other None
ERR6866807 RR-TB lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675275 Other lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR4800341 HR-TB lineage3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2514817 Sensitive lineage1.2.2.2 gb
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR1792478 HR-TB La1.7.1 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675558 MDR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR3675492 Other La1.7;lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR702406 Other lineage2.1 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR6045555 Other lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR3675545 RR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
SRR6045526 Other lineage4.9 None
ERR323047 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046066 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9786986 HR-TB lineage4.1.2.1 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR9971270 RR-TB lineage2.2.1 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3445502 HR-TB lineage4.9;lineage7 None
SRR7069175 Sensitive lineage1.2.2.2 None
SRR1165699 Other lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3283042 HR-TB lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR20969677 HR-TB La3;lineage2 None
SRR3675450 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4797588 MDR-TB lineage3 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR4188350 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675515 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675554 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR7496509 Other None
SRR1184381 MDR-TB None
ERR9117709 Other None
SRR6789626 Other None
ERR11252736 Other lineage4.9 None
SRR18213713 HR-TB None
ERR4816999 Other None
SRR28044873 Pre-XDR-TB lineage3 None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1196583 Other lineage4.9 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR3675549 Other lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR7070606 Sensitive lineage1.2.2.2 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675322 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4817896 HR-TB lineage2.2.1 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR6046141 Other lineage4.9 None
SRR3675561 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311098 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1167384 Other La3;lineage4.9 None
ERR3283031 Other La3;lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675444 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR5311089 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None