Rv0001 - c.682T>C


Drug resistance types
1 Sensitive 6 RR-TB 34 HR-TB 8 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 16 Other
lineage Counts
lineage Count
lineage4.9 25
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage2.2.1 3
lineage4.1.2.1 1
lineage4.1.1.1 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La3 1
lineage3 2
1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage4.9 2
lineage2.1;lineage4.9;lineage6.3 4
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.6.1.1 1
lineage2.1 1
lineage2.1;lineage4.1.4;lineage4.9 1
La1.7;lineage4.9 4
M.canetti;lineage4.9 3
La1.7.1 1
La3;lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage4.2;lineage4.9 1
lineage4 1
La3;lineage2 1
lineage4.9;lineage9 1
La1.2.BCG 1
La3;M.canetti;lineage2.2.1 1
La1.6;La3;M.canetti;lineage4.2.2 1
M.canetti;lineage2.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 67
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4820773 HR-TB lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR176741 Other lineage4.9 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR9119669 MDR-TB lineage4.9 None
SRR6045526 Other lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
SRR3675461 RR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR4815441 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR4819877 HR-TB lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
SRR1172728 RR-TB La3 None
ERR4797588 MDR-TB lineage3 None
SRR6046485 Other lineage4.9 None
SRR1184381 MDR-TB None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR3797015 HR-TB lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4816470 HR-TB lineage3 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
SRR1196583 Other lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR6046141 Other lineage4.9 None
SRR6045555 Other lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6046133 HR-TB lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR9971270 RR-TB lineage2.2.1 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4816478 HR-TB lineage4 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR3283042 HR-TB lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR473332 Other lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR20969677 HR-TB La3;lineage2 None
ERR3283040 HR-TB lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR3283018 HR-TB lineage4.9 None
ERR4819241 Other lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811493 HR-TB lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None