Rv0001 - c.693A>G


Drug resistance types
1 Sensitive 6 RR-TB 42 HR-TB 21 MDR-TB 9 Pre-XDR-TB 2 XDR-TB 77 Other
lineage Counts
lineage Count
lineage4.9 32
lineage2.1;lineage4.9 12
lineage4.6.2.2 3
lineage2.2.1 21
16
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage4.9;lineage6.3 3
lineage6.3.1 1
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage4.9;lineage6.3 9
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
La1.7;lineage4.9;lineage7 2
lineage2.1 3
La3;lineage4.9 3
lineage2.1;lineage4.3.2;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage4.1.2.1 3
lineage4.1.1.1 1
lineage4.3.3 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 2
La1.7;M.canetti;lineage4.9 1
lineage2.2 1
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage2.1;lineage4.9 1
M.canetti;lineage2.1;lineage4.9 2
lineage2.2.2 1
La3;lineage1.1.2 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La2;lineage4.9 1
lineage4 2
lineage4.1.3 2
lineage4.3.2 1
La3 2
lineage4.3.4.1 1
La1.7;lineage4.9 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage4.9 2
lineage3 2
La3;lineage4.8 1
La1.7.1 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage3.1 1
La3;lineage2 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
spoligotype Counts
spoligotype Count
None 158
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675311 Other lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
SRR10040466 MDR-TB lineage2.2.1 None
SRR3675572 Other None
ERR4815604 Other None
ERR9117709 Other None
ERR11252736 Other lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR3675524 Other lineage4.9;lineage6.3 None
SRR21277250 MDR-TB lineage2.2.1 None
SRR21276915 MDR-TB lineage2.2.1 None
ERR9787139 Other lineage6.3.1 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR4818929 HR-TB lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1173633 Other lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
SRR1184312 Other lineage2.2.1 None
SRR12142341 HR-TB lineage2.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR176643 Other La3;lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675461 RR-TB lineage4.9 None
SRR15316499 MDR-TB lineage2.2.1 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496472 Other lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR4815441 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
SRR1165699 Other lineage4.9 None
SRR10040467 MDR-TB lineage2.2.1 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR4596910 Sensitive lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR1165628 Other La3;lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR21277574 Pre-XDR-TB lineage2.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4819241 Other lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR11662690 HR-TB lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR7496509 Other None
SRR1184381 MDR-TB None
ERR9786671 Other None
ERR9786843 Other None
SRR6789626 Other None
ERR234659 HR-TB None
SRR18213713 HR-TB None
SRR1172857 Other None
SRR3675236 Other None
ERR4816999 Other None
SRR25207058 MDR-TB lineage2.2.1 None
SRR1196583 Other lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR3675275 Other lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4810624 MDR-TB lineage2.2 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4820773 HR-TB lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
SRR21887697 Pre-XDR-TB lineage2.2.1 None
ERR702406 Other lineage2.1 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR15368955 MDR-TB lineage2.2.1 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
SRR6046066 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR3804169 HR-TB lineage4.1.3 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4811355 Pre-XDR-TB lineage2.2.1 cn
ERR9117805 Other lineage4.3.2 None
SRR1172951 Other lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR176751 HR-TB lineage4.9 None
SRR1172728 RR-TB La3 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
SRR1172817 Other La3 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR9786604 Other None
ERR212001 HR-TB None
ERR9787197 Other None
SRR6045795 Other lineage2.2.1 None
ERR6866807 RR-TB lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR10040171 Pre-XDR-TB lineage2.2.1 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR4800341 HR-TB lineage3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
SRR3675549 Other lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR1792478 HR-TB La1.7.1 None
SRR1167384 Other La3;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR15316588 Pre-XDR-TB lineage2.2.1 None
ERR9119669 MDR-TB lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
ERR4769521 RR-TB lineage4.9 None
SRR10040315 MDR-TB lineage2.2.1 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR1184346 HR-TB lineage3.1 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4816478 HR-TB lineage4 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4816656 Other lineage4.9 None
SRR25207331 Pre-XDR-TB lineage2.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1196546 Other lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR4797588 MDR-TB lineage3 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None