Rv3793 - c.960C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
18 Sensitive
1 RR-TB
33 HR-TB
1 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
39 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 41 |
| La3;lineage4.9 | 12 |
| M.canetti;lineage1 | 1 |
| lineage4.8 | 1 |
| 2 | |
| lineage2.2.1 | 6 |
| lineage1.1.2 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4 | 2 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4 | 2 |
| lineage4.5 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 92 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046492 | Other | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR12006550 | Sensitive | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR29096683 | Sensitive | lineage1.1.2 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR212033 | Other | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5535933 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046046 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR6358991 | HR-TB | None | ERR161037 | Other | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR6044835 | Other | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR6359082 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR5341373 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None |
|---|
