Rv0001 - c.675C>G


Drug resistance types
18 Sensitive 17 RR-TB 32 HR-TB 66 MDR-TB 1 Pre-XDR-TB 2 XDR-TB 32 Other
lineage Counts
lineage Count
4
La3;lineage4.9 3
lineage4.1.2 2
lineage2.1;lineage4.9 4
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
La1.7;M.canetti;lineage4.9 2
lineage4.9 38
La3;lineage2.1;lineage4.9 1
M.canetti;lineage2.1;lineage4.9 20
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
La1.8.1 1
lineage4.1.2.1 2
lineage2.1;lineage4.9;lineage6.3 5
lineage2.1;lineage4.3.2;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage4.9;lineage6.3 1
La1.7;lineage4.9 3
lineage4.4.1.1 1
M.canetti;lineage2.1;lineage6.3 1
La3 1
lineage2.2.1 4
M.canetti;lineage4.9 3
lineage4.1.1.3;lineage4.9 1
La3;M.canetti;lineage2.2.1 1
La3;M.canetti;lineage2.1;lineage4.9 7
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
lineage2.1 1
lineage4.6.2.2 2
lineage1;lineage4.9 1
lineage4.5 1
M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage4.9;lineage7 1
La3;lineage2 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
M.canetti;lineage2.1 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
La1.7.1 1
La3;M.canetti;lineage3.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage5.1.4 1
lineage1.1.3.1 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.2 2
lineage4.2.1.1;lineage4.3.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage2.2;lineage6.3 1
M.canetti;lineage2.1;lineage4 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage3.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
M.canetti;lineage1 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage4 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.9;lineage9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.3.3 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
spoligotype Counts
spoligotype Count
None 168
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1184381 MDR-TB None
ERR11252612 Other La3;lineage4.9 None
ERR11252730 Sensitive lineage4.1.2 None
SRR12708416 Sensitive None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR20632814 Sensitive lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
SRR6045555 Other lineage4.9 None
SRR3675545 RR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3797016 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675506 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797023 MDR-TB La1.8.1 None
SRR11033628 Sensitive lineage4.1.2.1 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR5311096 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR400326 Other lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR1023525 HR-TB La1.7;lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR3675387 Other lineage4.9 None
SRR1172728 RR-TB La3 None
SRR12708372 Sensitive lineage4.9 None
SRR13861400 Other lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
ERR4188350 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675515 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311083 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675554 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786843 Other None
SRR1640750 RR-TB None
ERR11252736 Other lineage4.9 None
SRR1196583 Other lineage4.9 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675322 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675558 MDR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR3675501 Other La1.7;lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
SRR3675561 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675444 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
ERR386953 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675461 RR-TB lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR4811031 Other lineage4.5 None
ERR400336 Sensitive lineage4.9 None
ERR4811030 Other lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR4819877 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6044815 RR-TB lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR3675450 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6044819 Sensitive lineage4.9 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
ERR3468607 RR-TB lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6045952 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR4819241 Other lineage4.9 None
SRR7240492 MDR-TB La1.7.1 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR3675464 MDR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR2513283 Sensitive lineage5.1.4 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR9971114 Other lineage2.2.1 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR400320 Sensitive lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR20970043 MDR-TB lineage2.2.1 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR4820773 HR-TB lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR5311098 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1167384 Other La3;lineage4.9 None
SRR3675455 Sensitive lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR5311089 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045526 Other lineage4.9 None
ERR323047 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR3283016 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR400345 Other lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675486 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675580 Sensitive lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR2229143 RR-TB lineage4.9 None
ERR6358837 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816478 HR-TB lineage4 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR4812155 Other lineage4.9 None
ERR3283042 HR-TB lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR12708419 Other lineage4.3.3 None
ERR4819422 HR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675568 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR971389 Other lineage4.9 None
ERR11252566 Sensitive lineage4.1.2 None