Rv3854c - c.869dupA
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
2 HR-TB
149 MDR-TB
95 Pre-XDR-TB
10 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 251 |
| lineage4.1.1.3;lineage4.8 | 4 |
| lineage2.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 256 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SAMN02586027 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR11488437 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR552074 | MDR-TB | lineage4.1.1.3 | None | ERR2199751 | MDR-TB | lineage4.1.1.3 | None | SRR1165328 | MDR-TB | lineage4.1.1.3;lineage4.8 | None | SRR26331642 | MDR-TB | lineage4.1.1.3 | None | ERR13286077 | MDR-TB | lineage4.1.1.3 | None | SRR1167266 | MDR-TB | lineage4.1.1.3 | None | ERR2515346 | MDR-TB | lineage4.1.1.3 | za | ERR553186 | MDR-TB | lineage4.1.1.3 | sz | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR553330 | MDR-TB | lineage4.1.1.3 | None | ERR550637 | MDR-TB | lineage4.1.1.3 | None | SRR1173441 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1184339 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488464 | MDR-TB | lineage4.1.1.3 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | SRR1169189 | MDR-TB | lineage4.1.1.3 | None | SRR1180940 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29097013 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488754 | MDR-TB | lineage4.1.1.3 | None | SRR29096161 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165691 | MDR-TB | lineage4.1.1.3 | None | SRR1169261 | MDR-TB | lineage4.1.1.3 | None | SRR1180152 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093408 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR553205 | MDR-TB | lineage4.1.1.3 | None | ERR4020193 | MDR-TB | lineage4.1.1.3 | None | SRR847790 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR1167279 | MDR-TB | lineage4.1.1.3;lineage4.8 | None | SRR1165631 | MDR-TB | lineage4.1.1.3 | None | SRR1165675 | MDR-TB | lineage4.1.1.3 | None | ERR9993087 | XDR-TB | lineage4.1.1.3 | None | ERR13266713 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2433008 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02403576 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7361983 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11773743 | XDR-TB | lineage4.1.1.3 | None | SRR1172306 | HR-TB | lineage4.1.1.3 | None | SRR9971369 | MDR-TB | lineage4.1.1.3 | None | SRR1062837 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488409 | MDR-TB | lineage4.1.1.3 | None | ERR11488904 | MDR-TB | lineage4.1.1.3 | None | SRR11349150 | MDR-TB | lineage4.1.1.3 | None | ERR11488862 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169190 | MDR-TB | lineage4.1.1.3 | None | SRR9971128 | MDR-TB | lineage4.1.1.3 | None | ERR9992638 | XDR-TB | lineage4.1.1.3 | None | ERR11488410 | MDR-TB | lineage4.1.1.3 | None | ERR2200064 | MDR-TB | lineage4.1.1.3 | None | SAMN02403533 | MDR-TB | lineage4.1.1.3 | za | SAMN02403542 | MDR-TB | lineage4.1.1.3 | za | SAMN02585992 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR11488546 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488649 | MDR-TB | lineage4.1.1.3 | None | ERR552181 | MDR-TB | lineage4.1.1.3 | None | ERR553355 | MDR-TB | lineage4.1.1.3 | None | SRR1172836 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173213 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173407 | MDR-TB | lineage4.1.1.3 | None | ERR2200061 | MDR-TB | lineage4.1.1.3 | None | ERR9992929 | XDR-TB | lineage4.1.1.3 | None | SRR1169204 | MDR-TB | lineage4.1.1.3 | None | SAMN02585970 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR1169256 | MDR-TB | lineage4.1.1.3 | None | SRR1180232 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971331 | MDR-TB | lineage4.1.1.3 | None | SRR9971048 | MDR-TB | lineage4.1.1.3 | None | SRR1172330 | MDR-TB | lineage4.1.1.3 | None | SRR1173624 | MDR-TB | lineage4.1.1.3 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993121 | XDR-TB | lineage4.1.1.3 | None | SRR10315667 | MDR-TB | lineage4.1.1.3 | None | ERR553328 | MDR-TB | lineage4.1.1.3 | None | ERR13286208 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992709 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4020196 | MDR-TB | lineage4.1.1.3 | None | ERR13289015 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971038 | MDR-TB | lineage4.1.1.3 | None | SRR1167307 | MDR-TB | lineage4.1.1.3 | None | SRR9971086 | MDR-TB | lineage4.1.1.3 | None | SRR1165336 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR6896240 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR552289 | MDR-TB | lineage4.1.1.3 | None | SRR1165695 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169272 | MDR-TB | lineage4.1.1.3 | None | SRR1173724 | MDR-TB | lineage4.1.1.3;lineage4.8 | None | ERR4020195 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488467 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR551240 | MDR-TB | lineage4.1.1.3 | None | ERR11488954 | XDR-TB | lineage4.1.1.3 | None | ERR552295 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488610 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR2199805 | MDR-TB | lineage4.1.1.3 | None | SRR833068 | MDR-TB | lineage4.1.1.3 | None | ERR11488711 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1184019 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1196541 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1181322 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165673 | MDR-TB | lineage4.1.1.3 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR13289281 | XDR-TB | lineage4.1.1.3 | None | SRR11349141 | MDR-TB | lineage4.1.1.3 | None | SRR1011465 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488460 | MDR-TB | lineage4.1.1.3 | None | ERR7737679 | MDR-TB | lineage4.1.1.3 | None | SRR1173876 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR2199778 | MDR-TB | lineage4.1.1.3 | None | ERR4020192 | MDR-TB | lineage4.1.1.3 | None | SRR1165713 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1183090 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4020190 | MDR-TB | lineage4.1.1.3 | None | SRR1169167 | MDR-TB | lineage4.1.1.3 | None | SRR1019158 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | ERR7361990 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1167333 | MDR-TB | lineage4.1.1.3 | None | ERR9993054 | XDR-TB | lineage4.1.1.3 | None | ERR7361958 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488499 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4809065 | MDR-TB | lineage4.1.1.3 | za | SAMN01925645 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11773707 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4809172 | MDR-TB | lineage4.1.1.3 | za | ERR4809200 | MDR-TB | lineage4.1.1.3 | za | ERR4809202 | MDR-TB | lineage4.1.1.3 | za | ERR4830531 | MDR-TB | lineage4.1.1.3 | None | SRR1140965 | MDR-TB | lineage4.1.1.3 | None | SRR9971050 | MDR-TB | lineage4.1.1.3 | None | ERR11488358 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8975739 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR553029 | MDR-TB | lineage4.1.1.3 | None | ERR9993037 | XDR-TB | lineage4.1.1.3 | None | SAMN02350424 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR1165663 | MDR-TB | lineage4.1.1.3 | None | ERR2515990 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515794 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515479 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515597 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515826 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515386 | MDR-TB | lineage4.1.1.3 | za | ERR2515425 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR553204 | MDR-TB | lineage4.1.1.3 | sz | ERR553354 | MDR-TB | lineage4.1.1.3 | sz | ERR550959 | MDR-TB | lineage4.1.1.3 | sz | ERR553028 | MDR-TB | lineage4.1.1.3 | sz | ERR550864 | MDR-TB | lineage4.1.1.3 | sz | ERR553343 | MDR-TB | lineage4.1.1.3 | sz | ERR553105 | MDR-TB | lineage4.1.1.3 | sz | ERR551241 | MDR-TB | lineage4.1.1.3 | sz | ERR552720 | MDR-TB | lineage4.1.1.3 | sz | ERR552917 | MDR-TB | lineage4.1.1.3 | sz | ERR552151 | MDR-TB | lineage4.1.1.3 | sz | ERR552361 | MDR-TB | lineage4.1.1.3 | sz | ERR551246 | MDR-TB | lineage4.1.1.3 | sz | ERR550813 | MDR-TB | lineage4.1.1.3 | sz | ERR551393 | MDR-TB | lineage4.1.1.3 | sz | ERR552296 | Pre-XDR-TB | lineage4.1.1.3 | sz | ERR552288 | MDR-TB | lineage4.1.1.3 | sz | ERR552073 | MDR-TB | lineage4.1.1.3 | sz | ERR551938 | MDR-TB | lineage4.1.1.3 | sz | ERR552751 | MDR-TB | lineage4.1.1.3 | sz | ERR552994 | MDR-TB | lineage4.1.1.3 | sz | ERR553264 | MDR-TB | lineage4.1.1.3 | sz | ERR550734 | MDR-TB | lineage4.1.1.3 | sz | SRR1062841 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992924 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488851 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4423717 | MDR-TB | lineage4.1.1.3 | None | SAMN02350472 | MDR-TB | lineage4.1.1.3 | za | SAMN02350483 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02403522 | MDR-TB | lineage4.1.1.3 | za | SAMN02403523 | MDR-TB | lineage4.1.1.3 | za | ERR11488733 | MDR-TB | lineage4.1.1.3 | None | ERR7737897 | MDR-TB | lineage4.1.1.3 | None | ERR11488784 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488586 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1181086 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR552182 | MDR-TB | lineage4.1.1.3 | None | ERR9993128 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR2199988 | MDR-TB | lineage4.1.1.3 | None | SRR1173587 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488677 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1167366 | MDR-TB | lineage4.1.1.3 | None | SRR11349140 | MDR-TB | lineage4.1.1.3 | None | SRR1183001 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1172247 | MDR-TB | lineage4.1.1.3 | None | ERR4896315 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR833056 | MDR-TB | lineage4.1.1.3 | None | ERR551937 | MDR-TB | lineage4.1.1.3 | None | SRR9971181 | MDR-TB | lineage4.1.1.3 | None | ERR11488540 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4020191 | MDR-TB | lineage4.1.1.3 | None | SRR1167260 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173032 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1167338 | MDR-TB | lineage4.1.1.3 | None | SRR1173861 | MDR-TB | lineage4.1.1.3;lineage4.8 | None | ERR552075 | MDR-TB | lineage4.1.1.3 | None | ERR553185 | MDR-TB | lineage4.1.1.3 | None | SAMN02350428 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR9806692 | MDR-TB | lineage4.1.1.3 | None | SRR1019151 | MDR-TB | lineage4.1.1.3 | None | ERR9992762 | XDR-TB | lineage4.1.1.3 | None | SRR1169289 | MDR-TB | lineage4.1.1.3 | None | SRR1167368 | MDR-TB | lineage4.1.1.3 | None | SRR29055667 | MDR-TB | lineage4.1.1.3 | None | SRR9971237 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169203 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR2515262 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165669 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10315722 | MDR-TB | lineage4.1.1.3 | None | SRR10315721 | MDR-TB | lineage4.1.1.3 | None | SRR1173456 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165274 | MDR-TB | lineage4.1.1.3 | None | ERR11488914 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02403545 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02403525 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR924217 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR553342 | MDR-TB | lineage4.1.1.3 | None | ERR9993044 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1140951 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10610374 | MDR-TB | lineage4.1.1.3 | None | ERR552993 | MDR-TB | lineage4.1.1.3 | None | ERR552916 | MDR-TB | lineage4.1.1.3 | None | ERR11488560 | MDR-TB | lineage4.1.1.3 | None | SRR1173737 | MDR-TB | lineage4.1.1.3 | None | ERR8774397 | MDR-TB | lineage4.1.1.3 | None | ERR11488513 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7361992 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169301 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488551 | MDR-TB | lineage4.1.1.3 | None | SRR1165683 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971378 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869076 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173736 | MDR-TB | lineage4.1.1.3 | None | SAMN02403577 | MDR-TB | lineage4.1.1.3 | za | SAMN02403532 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02403546 | MDR-TB | lineage4.1.1.3 | za | SAMN02403541 | MDR-TB | lineage4.1.1.3 | za | SRR1165714 | MDR-TB | lineage4.1.1.3 | None | SRR1169241 | HR-TB | lineage4.1.1.3 | None | SAMN02585963 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR11488416 | MDR-TB | lineage4.1.1.3 | None | ERR4809073 | MDR-TB | lineage4.1.1.3 | za | ERR11488597 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4830532 | MDR-TB | lineage4.1.1.3 | za | ERR8976048 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4020194 | MDR-TB | lineage4.1.1.3 | None | ERR7737692 | MDR-TB | lineage4.1.1.3 | None | SRR1165209 | MDR-TB | lineage4.1.1.3 | None | ERR550863 | MDR-TB | lineage4.1.1.3 | None | ERR11488878 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11466358 | MDR-TB | lineage4.1.1.3 | None | SAMN02053765 | MDR-TB | lineage4.1.1.3 | za |
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