Rv2780 - c.464delG
Drug resistance types
0 Sensitive
0 RR-TB
1 HR-TB
140 MDR-TB
157 Pre-XDR-TB
12 XDR-TB
2 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 217 |
| lineage4.4.1.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1 | 4 |
| lineage2.2 | 2 |
| lineage1.1.2 | 7 |
| lineage3 | 2 |
| lineage2.2.1 | 39 |
| lineage4.2.1 | 6 |
| lineage4.1.2.1 | 5 |
| lineage4.7 | 3 |
| lineage4.3.3;lineage2.2.1 | 4 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.2 | 4 |
| lineage1.2.2.2 | 1 |
| lineage4.8;lineage4.1.1.3 | 3 |
| lineage4.9 | 5 |
| lineage3.1.2;lineage2.2.1 | 1 |
| 2 | |
| lineage4 | 2 |
| lineage4.8 | 1 |
| lineage1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 312 |
Geographic prevalence
Country level data for this variant is available for 68 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SAMN02585963 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR552182 | MDR-TB | lineage4.1.1.3 | None | SAMN02403523 | MDR-TB | lineage4.1.1.3 | za | SAMN02403533 | MDR-TB | lineage4.1.1.3 | za | SAMN02403532 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02403522 | MDR-TB | lineage4.1.1.3 | za | SAMN02403546 | MDR-TB | lineage4.1.1.3 | za | SAMN02403541 | MDR-TB | lineage4.1.1.3 | za | SAMN02403542 | MDR-TB | lineage4.1.1.3 | za | SAMN02403577 | MDR-TB | lineage4.1.1.3 | za | ERR2515262 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR2653195 | Pre-XDR-TB | lineage4.4.1.1 | None | SAMN02403525 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4798135 | XDR-TB | lineage4.2.2.2 | in | ERR2653235 | MDR-TB | lineage4.1.1 | None | SRR23310906 | MDR-TB | lineage2.2 | None | SRR7898227 | Pre-XDR-TB | lineage1.1.2 | in | ERR2516883 | MDR-TB | lineage3 | gb | ERR4830145 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796435 | Pre-XDR-TB | lineage2.2.1 | in | SRR23311047 | Pre-XDR-TB | lineage4.2.1 | None | ERR4799582 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR4828855 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4799563 | Pre-XDR-TB | lineage1.1.2 | in | ERR4829049 | MDR-TB | lineage4.7 | it | ERR4799930 | Pre-XDR-TB | lineage1.1.2 | in | SRR6353887 | Pre-XDR-TB | lineage2.2.1 | None | SRR6896240 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4829729 | Pre-XDR-TB | lineage4.7 | it | ERR3287438 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR9971331 | MDR-TB | lineage4.1.1.3 | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | ERR11488586 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971237 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR7131008 | MDR-TB | lineage4.7 | None | SRR924217 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488409 | MDR-TB | lineage4.1.1.3 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR11488649 | MDR-TB | lineage4.1.1.3 | None | ERR11488358 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR833068 | MDR-TB | lineage4.1.1.3 | None | ERR11488416 | MDR-TB | lineage4.1.1.3 | None | ERR11488410 | MDR-TB | lineage4.1.1.3 | None | SRR833056 | MDR-TB | lineage4.1.1.3 | None | ERR11488610 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971369 | MDR-TB | lineage4.1.1.3 | None | ERR11488437 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971378 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488460 | MDR-TB | lineage4.1.1.3 | None | ERR11488467 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR8358462 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488499 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488677 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971038 | MDR-TB | lineage4.1.1.3 | None | SRR9971048 | MDR-TB | lineage4.1.1.3 | None | SRR9971050 | MDR-TB | lineage4.1.1.3 | None | ERR11488784 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR7652976 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971086 | MDR-TB | lineage4.1.1.3 | None | ERR11488711 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488754 | MDR-TB | lineage4.1.1.3 | None | SRR7657752 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488862 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488733 | MDR-TB | lineage4.1.1.3 | None | SRR9971128 | MDR-TB | lineage4.1.1.3 | None | SRR9971181 | MDR-TB | lineage4.1.1.3 | None | SRR7781496 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR1034637 | Pre-XDR-TB | lineage2.2.1 | None | DRR130076 | Pre-XDR-TB | lineage2.2.1 | None | DRR130180 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488464 | MDR-TB | lineage4.1.1.3 | None | ERR11488954 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488560 | MDR-TB | lineage4.1.1.3 | None | ERR1034638 | Pre-XDR-TB | lineage2.2.1 | None | DRR130181 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488546 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488551 | MDR-TB | lineage4.1.1.3 | None | ERR11488540 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488878 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488597 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11798713 | Pre-XDR-TB | lineage4.2.1 | None | ERR10762353 | Pre-XDR-TB | lineage4.2.1 | None | ERR1394280 | Pre-XDR-TB | lineage1.1.2 | None | ERR11488851 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11488513 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4020192 | MDR-TB | lineage4.1.1.3 | None | ERR4020193 | MDR-TB | lineage4.1.1.3 | None | ERR4020191 | MDR-TB | lineage4.1.1.3 | None | ERR4020196 | MDR-TB | lineage4.1.1.3 | None | ERR4020195 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4020190 | MDR-TB | lineage4.1.1.3 | None | ERR4020194 | MDR-TB | lineage4.1.1.3 | None | ERR2515479 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515346 | MDR-TB | lineage4.1.1.3 | za | ERR2515990 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515794 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR4423717 | MDR-TB | lineage4.1.1.3 | None | ERR2515597 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515425 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515826 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515386 | MDR-TB | lineage4.1.1.3 | za | ERR4828819 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4809172 | MDR-TB | lineage4.1.1.3 | za | ERR4830532 | MDR-TB | lineage4.1.1.3 | za | ERR4809065 | MDR-TB | lineage4.1.1.3 | za | ERR4809200 | MDR-TB | lineage4.1.1.3 | za | ERR8665927 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665963 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975739 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8976048 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4809202 | MDR-TB | lineage4.1.1.3 | za | ERR4809073 | MDR-TB | lineage4.1.1.3 | za | ERR8665862 | Pre-XDR-TB | lineage4.3.3;lineage2.2.1 | None | ERR8665867 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830531 | MDR-TB | lineage4.1.1.3 | None | ERR7361990 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5863725 | MDR-TB | lineage2.2.1 | None | ERR7361958 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7361983 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11466358 | MDR-TB | lineage4.1.1.3 | None | ERR7362003 | Pre-XDR-TB | lineage2.2 | None | ERR7361992 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7737679 | MDR-TB | lineage4.1.1.3 | None | ERR7737897 | MDR-TB | lineage4.1.1.3 | None | ERR7737692 | MDR-TB | lineage4.1.1.3 | None | ERR9992638 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8665662 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665695 | XDR-TB | lineage4.3.3;lineage2.2.1 | None | ERR8665694 | XDR-TB | lineage4.3.3;lineage2.2.1 | None | ERR8774397 | MDR-TB | lineage4.1.1.3 | None | ERR7975649 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665661 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992762 | XDR-TB | lineage4.1.1.3 | None | ERR9992709 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992838 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR9993037 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992924 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993044 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992835 | Pre-XDR-TB | lineage2.2.2 | None | ERR9992929 | XDR-TB | lineage4.1.1.3 | None | ERR9993054 | XDR-TB | lineage4.1.1.3 | None | ERR9993158 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR9993121 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993087 | XDR-TB | lineage4.1.1.3 | None | ERR9993128 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1011465 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1019151 | MDR-TB | lineage4.1.1.3 | None | SRR1019158 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10315722 | MDR-TB | lineage4.1.1.3 | None | SRR10315721 | MDR-TB | lineage4.1.1.3 | None | SRR10303280 | Pre-XDR-TB | lineage2.2.1 | None | SRR10303354 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315667 | MDR-TB | lineage4.1.1.3 | None | SRR10379978 | Pre-XDR-TB | lineage4.2.1 | None | SRR1062837 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10380062 | Pre-XDR-TB | lineage4.2.1 | None | SRR10430401 | Pre-XDR-TB | lineage2.2.1 | None | SRR10430357 | Pre-XDR-TB | lineage2.2.1 | None | SRR1062841 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165209 | MDR-TB | lineage4.1.1.3 | None | SRR10869076 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR11349141 | MDR-TB | lineage4.1.1.3 | None | SRR11349150 | MDR-TB | lineage4.1.1.3 | None | SRR1140951 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR11349140 | MDR-TB | lineage4.1.1.3 | None | SRR1140965 | MDR-TB | lineage4.1.1.3 | None | SRR1165274 | MDR-TB | lineage4.1.1.3 | None | SRR1165675 | MDR-TB | lineage4.1.1.3 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165336 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165631 | MDR-TB | lineage4.1.1.3 | None | SRR1165663 | MDR-TB | lineage4.1.1.3 | None | SRR1165328 | MDR-TB | lineage4.1.1.3 | None | SRR1165673 | MDR-TB | lineage4.1.1.3 | None | SRR1165669 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165695 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165683 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165691 | MDR-TB | lineage4.1.1.3 | None | SRR1165714 | MDR-TB | lineage4.1.1.3 | None | SRR1165713 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1167260 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1167266 | MDR-TB | lineage4.1.1.3 | None | SRR1167338 | MDR-TB | lineage4.1.1.3 | None | SRR1167279 | MDR-TB | lineage4.8;lineage4.1.1.3 | None | SRR1167307 | MDR-TB | lineage4.1.1 | None | SRR1167333 | MDR-TB | lineage4.1.1.3 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | SRR1167366 | MDR-TB | lineage4.1.1.3 | None | SRR1167368 | MDR-TB | lineage4.1.1.3 | None | SRR1169204 | MDR-TB | lineage4.1.1.3 | None | SRR1169167 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169190 | MDR-TB | lineage4.1.1.3 | None | SRR1169189 | MDR-TB | lineage4.1.1.3 | None | SRR1169203 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169241 | MDR-TB | lineage4.1.1.3 | None | SRR1169261 | MDR-TB | lineage4.1.1.3 | None | SRR1173441 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169256 | MDR-TB | lineage4.1.1.3 | None | SRR1169289 | MDR-TB | lineage4.1.1.3 | None | SRR1172247 | MDR-TB | lineage4.1.1.3 | None | SRR1172306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1172330 | MDR-TB | lineage4.1.1.3 | None | SRR1172836 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173407 | MDR-TB | lineage4.1.1.3 | None | SRR1169272 | MDR-TB | lineage4.1.1.3 | None | SRR1169301 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173032 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173213 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173861 | MDR-TB | lineage4.8;lineage4.1.1.3 | None | SRR1173456 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173587 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173624 | MDR-TB | lineage4.1.1.3 | None | SRR1173724 | MDR-TB | lineage4.8;lineage4.1.1.3 | None | SRR1173736 | MDR-TB | lineage4.1.1.3 | None | SRR1173737 | MDR-TB | lineage4.1.1.3 | None | SRR1173876 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1180232 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1180152 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180940 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1181322 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1181086 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1183001 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1196541 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1184339 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR11662129 | Pre-XDR-TB | lineage2.2.1 | None | SRR1183090 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1184019 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR13232469 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232781 | XDR-TB | lineage2.2.1 | None | SRR13232740 | XDR-TB | lineage2.2.1 | None | SRR13232480 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232708 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232759 | XDR-TB | lineage4.3.3;lineage2.2.1 | None | SRR14801880 | Pre-XDR-TB | lineage2.2.1 | None | SRR18714834 | Pre-XDR-TB | lineage2.2.1 | None | SRR20632776 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715197 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025477 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488914 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR25827304 | XDR-TB | lineage3.1.2;lineage2.2.1 | None | ERR11138659 | XDR-TB | lineage2.2.2 | None | ERR11488904 | MDR-TB | lineage4.1.1.3 | None | SRR25827593 | Pre-XDR-TB | lineage1.1.2 | None | ERR8025699 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025622 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806692 | MDR-TB | lineage4.1.1.3 | None | ERR9806767 | Pre-XDR-TB | None | ERR9806733 | MDR-TB | lineage4 | None | ERR9806781 | MDR-TB | lineage4.1.1 | None | ERR9806778 | MDR-TB | lineage4.9 | None | ERR10610193 | MDR-TB | lineage4.1.1 | None | ERR9806791 | MDR-TB | lineage4.9 | None | ERR9807001 | Pre-XDR-TB | lineage2.2.1 | None | ERR10610096 | MDR-TB | lineage4.9 | None | ERR10610061 | MDR-TB | lineage4.9 | None | ERR8025584 | Pre-XDR-TB | lineage2.2.2 | None | ERR10610103 | Pre-XDR-TB | None | ERR10610174 | MDR-TB | lineage4 | None | ERR10610374 | MDR-TB | lineage4.1.1.3 | None | ERR4896315 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5758315 | Pre-XDR-TB | lineage2.2.2 | None | SRR25827590 | HR-TB | lineage1.1.2 | None | SRR26331628 | Pre-XDR-TB | lineage2.2.1 | None | SRR26331591 | Pre-XDR-TB | lineage2.2.1 | None | SRR26331642 | MDR-TB | lineage4.1.1.3 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR25827591 | Pre-XDR-TB | lineage1.1.2 | None | ERR1035286 | Pre-XDR-TB | lineage4.1.2.1 | br | ERR553028 | MDR-TB | lineage4.1.1.3 | sz | ERR553204 | MDR-TB | lineage4.1.1.3 | sz | ERR553328 | MDR-TB | lineage4.1.1.3 | None | ERR553354 | MDR-TB | lineage4.1.1.3 | sz | ERR550959 | MDR-TB | lineage4.1.1.3 | sz | ERR553105 | MDR-TB | lineage4.1.1.3 | sz | ERR553343 | MDR-TB | lineage4.1.1.3 | sz | ERR550864 | MDR-TB | lineage4.1.1.3 | sz | ERR552720 | MDR-TB | lineage4.1.1.3 | sz | ERR551241 | MDR-TB | lineage4.1.1.3 | sz | ERR552151 | MDR-TB | lineage4.1.1.3 | sz | ERR552917 | MDR-TB | lineage4.1.1.3 | sz | ERR553186 | MDR-TB | lineage4.1.1.3 | sz | ERR552361 | MDR-TB | lineage4.1.1.3 | sz | ERR550813 | MDR-TB | lineage4.1.1.3 | sz | ERR551393 | MDR-TB | lineage4.1.1.3 | sz | ERR552296 | Pre-XDR-TB | lineage4.1.1.3 | sz | ERR551246 | MDR-TB | lineage4.1.1.3 | sz | ERR552073 | MDR-TB | lineage4.1.1.3 | sz | ERR552288 | MDR-TB | lineage4.1.1.3 | sz | ERR551938 | MDR-TB | lineage4.1.1.3 | sz | ERR552751 | MDR-TB | lineage4.1.1.3 | sz | ERR550734 | MDR-TB | lineage4.1.1.3 | sz | ERR552994 | MDR-TB | lineage4.1.1.3 | sz | ERR553264 | MDR-TB | lineage4.1.1.3 | sz | SAMN02350472 | MDR-TB | lineage4.1.1.3 | za | SRR3743398 | Pre-XDR-TB | lineage4.2.1 | None | SAMN02350483 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02403576 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02585970 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02586027 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02053765 | MDR-TB | lineage4.1.1.3 | za | ERR2229324 | Other | lineage4.8 | None | ERR2433008 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02350424 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02350428 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR047880 | MDR-TB | lineage1.1.1 | ru | SRR847790 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR552075 | MDR-TB | lineage4.1.1.3 | None | SAMN02403545 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR2510270 | Pre-XDR-TB | lineage3 | None | SAMN02585992 | Pre-XDR-TB | lineage4.1.1.3 | za |
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