Rv0006 - c.2097T>C
Drug resistance types
12 Sensitive
4 RR-TB
39 HR-TB
16 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
82 Other
lineage Counts
| lineage | Count |
|---|---|
| 19 | |
| lineage2.1;lineage4.9 | 10 |
| La1.6;lineage4 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9 | 36 |
| lineage2.2.1 | 9 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.1.1.3 | 2 |
| La1.7 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| M.canetti;lineage4.9 | 3 |
| lineage2.1 | 1 |
| La3 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.8.1 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage2.2 | 2 |
| La1.7;M.canetti;lineage4.9 | 4 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 7 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.3.4 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3 | 3 |
| lineage4.6.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage6.3.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La2;lineage2.2 | 1 |
| La2;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 155 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9786843 | Other | None | ERR2514692 | Other | None | SRR25827682 | Other | None | ERR9787197 | Other | None | ERR234659 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR29096410 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR6789626 | Other | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR6358991 | HR-TB | None | ERR4811075 | Other | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR12416824 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR29096659 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR28119777 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR29097004 | Other | lineage3 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4800341 | Other | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4811105 | HR-TB | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR4811142 | RR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12006550 | Sensitive | None | SRR1165699 | Other | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR1184294 | Other | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR28119805 | Other | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR990545 | Other | lineage3 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None |
|---|
