Rv3795 - c.1539G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
46 Sensitive
0 RR-TB
23 HR-TB
2 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
21 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage4.9 | 4 |
| lineage4.9 | 26 |
| lineage1.2.1 | 39 |
| 3 | |
| lineage4 | 3 |
| lineage1;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.1.1.3 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage2.2.1 | 1 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 94 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR400309 | Sensitive | lineage1.2.1 | gb | SRR6045034 | Sensitive | lineage1.2.1 | gb | ERR13289570 | Sensitive | lineage1.2.1 | None | ERR1063896 | Sensitive | None | SRR6045053 | Other | lineage4 | None | ERR12544126 | Sensitive | lineage1.2.1 | None | SRR6046046 | Other | lineage4.9 | None | SRR14519743 | Sensitive | lineage1.2.1 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR21732605 | Sensitive | lineage1.2.1 | None | SRR14519845 | Sensitive | lineage1.2.1 | None | SRR28868821 | Sensitive | lineage1.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR14519837 | Sensitive | lineage1.2.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4769450 | Other | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR9786525 | Other | lineage4 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR27449976 | Sensitive | lineage1.2.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR12882045 | Sensitive | lineage1.2.1 | None | SRR14519757 | Sensitive | lineage1.2.1 | None | SRR14519839 | Sensitive | lineage1.2.1 | None | SRR22249703 | Sensitive | lineage1.2.1 | None | ERR9786843 | Other | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR212001 | HR-TB | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR14519853 | Sensitive | lineage1.2.1 | None | SRR14520010 | Sensitive | lineage1.2.1 | None | ERR2512840 | Sensitive | lineage1.2.1 | gb | SRR6046878 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR14519739 | Sensitive | lineage1.2.1 | None | SRR30182867 | Sensitive | lineage1.2.1 | None | SRR21733055 | Sensitive | lineage1.2.1 | None | SRR12882048 | Other | lineage1.2.1 | None | SRR3675270 | Other | lineage4.9 | None | SRR21732406 | Sensitive | lineage1.2.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR21732995 | Sensitive | lineage1.2.1 | None | SRR14519752 | Sensitive | lineage1.2.1 | None | SRR12882030 | Sensitive | lineage1.2.1 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR14519827 | Sensitive | lineage1.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR14519753 | Sensitive | lineage1.2.1 | None | SRR14519824 | Sensitive | lineage1.2.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR14519826 | Sensitive | lineage1.2.1 | None | SRR29440891 | Sensitive | lineage1.2.1 | None | SRR12882763 | Sensitive | lineage1.2.1 | None | ERR4769452 | Other | lineage4.9 | None | SRR21733238 | Sensitive | lineage1.2.1 | None | SRR27450570 | Sensitive | lineage1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR12882047 | Sensitive | lineage1.2.1 | None | SRR14636667 | Sensitive | lineage1.2.1 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR14519836 | Sensitive | lineage1.2.1 | None | SRR28868365 | Sensitive | lineage1.2.1 | None | SRR29096394 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SRR28868868 | HR-TB | lineage1.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR14519744 | Sensitive | lineage1.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None |
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