EBG00000313325 - n.878G>A
Drug resistance types
0 Sensitive
3 RR-TB
4 HR-TB
156 MDR-TB
88 Pre-XDR-TB
4 XDR-TB
10 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 187 |
| lineage4.4 | 1 |
| lineage1.1.2 | 10 |
| lineage1.2.1.2 | 2 |
| lineage4.9 | 5 |
| lineage1.2.1.2.1 | 5 |
| lineage4.8 | 11 |
| lineage3.1 | 7 |
| lineage4.1.2.1 | 6 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1.1.1 | 4 |
| lineage3 | 4 |
| La1.8.1 | 1 |
| lineage4.6.2.2 | 2 |
| 5 | |
| lineage4.9;lineage3 | 1 |
| lineage4.4.1.1.1 | 4 |
| lineage4.8;lineage4.1.1.3 | 3 |
| lineage4.1.1 | 3 |
| lineage4.5 | 1 |
| lineage4.1.3 | 1 |
| lineage1.2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 265 |
Geographic prevalence
Country level data for this variant is available for 77 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SAMN02403532 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR551938 | MDR-TB | lineage4.1.1.3 | sz | ERR552751 | MDR-TB | lineage4.1.1.3 | sz | ERR553264 | MDR-TB | lineage4.1.1.3 | sz | ERR2515990 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02585970 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR5341306 | Pre-XDR-TB | lineage4.4 | None | ERR553343 | MDR-TB | lineage4.1.1.3 | sz | SAMN02403542 | MDR-TB | lineage4.1.1.3 | za | SRR5341359 | Pre-XDR-TB | lineage1.1.2 | in | ERR2515262 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR5817479 | MDR-TB | lineage1.2.1.2 | au | SAMN02403525 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR2653163 | HR-TB | lineage4.9 | None | ERR4822342 | MDR-TB | lineage1.2.1.2.1 | None | SAMN02403577 | MDR-TB | lineage4.1.1.3 | za | ERR553354 | MDR-TB | lineage4.1.1.3 | sz | ERR4830532 | MDR-TB | lineage4.1.1.3 | za | ERR551241 | MDR-TB | lineage4.1.1.3 | sz | ERR4830531 | MDR-TB | lineage4.1.1.3 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR4829005 | Pre-XDR-TB | lineage4.8 | None | SRR6896240 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02414990 | MDR-TB | lineage3.1 | se | SRR6152927 | Other | lineage1.2.1.2 | ca | ERR552288 | MDR-TB | lineage4.1.1.3 | sz | ERR551393 | MDR-TB | lineage4.1.1.3 | sz | ERR552073 | MDR-TB | lineage4.1.1.3 | sz | SRR7496513 | MDR-TB | lineage1.2.1.2.1 | us | ERR553204 | MDR-TB | lineage4.1.1.3 | sz | SAMN02350424 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR9971237 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | SRR924217 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR3132148 | MDR-TB | lineage4.1.2.1 | None | SRR9971331 | MDR-TB | lineage4.1.1.3 | None | SRR833068 | MDR-TB | lineage4.1.1.3 | None | SRR9738484 | MDR-TB | lineage4.8 | None | SRR833056 | MDR-TB | lineage4.1.1.3 | None | SRR9971038 | MDR-TB | lineage4.1.1.3 | None | SRR9971369 | MDR-TB | lineage4.1.1.3 | None | SRR9971378 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR847790 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR7592325 | MDR-TB | lineage4.8 | None | SRR7592347 | Pre-XDR-TB | lineage4.8 | None | SRR9971048 | MDR-TB | lineage4.1.1.3 | None | SRR9971086 | MDR-TB | lineage4.1.1.3 | None | SRR9971050 | MDR-TB | lineage4.1.1.3 | None | SRR9971181 | MDR-TB | lineage4.1.1.3 | None | SRR9971128 | MDR-TB | lineage4.1.1.3 | None | DRR130131 | MDR-TB | lineage1.2.1.2.1 | None | ERR1023386 | Other | lineage4.3.4.2.1 | None | ERR3287571 | MDR-TB | lineage4.1.2.1 | None | ERR1035108 | Other | lineage1.1.1.1 | vn | ERR11044001 | MDR-TB | lineage1.1.2 | None | ERR10680219 | RR-TB | lineage4.1.2.1 | None | ERR11043545 | MDR-TB | lineage3.1 | None | ERR4020192 | MDR-TB | lineage4.1.1.3 | None | ERR3335743 | Pre-XDR-TB | lineage3 | pk | ERR3335769 | Pre-XDR-TB | lineage3 | pk | ERR4020191 | MDR-TB | lineage4.1.1.3 | None | ERR3335739 | Pre-XDR-TB | lineage3 | pk | ERR3439548 | Other | La1.8.1 | None | ERR4020193 | MDR-TB | lineage4.1.1.3 | None | ERR4020196 | MDR-TB | lineage4.1.1.3 | None | ERR4423717 | MDR-TB | lineage4.1.1.3 | None | ERR4020190 | MDR-TB | lineage4.1.1.3 | None | ERR4020195 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4020194 | MDR-TB | lineage4.1.1.3 | None | ERR4423759 | MDR-TB | lineage4.6.2.2 | None | ERR4796913 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR4553594 | MDR-TB | None | ERR4553617 | MDR-TB | None | ERR4809172 | MDR-TB | lineage4.1.1.3 | za | ERR4809065 | MDR-TB | lineage4.1.1.3 | za | ERR4809073 | MDR-TB | lineage4.1.1.3 | za | ERR4809200 | MDR-TB | lineage4.1.1.3 | za | ERR5865067 | MDR-TB | lineage4.8 | None | ERR4809202 | MDR-TB | lineage4.1.1.3 | za | ERR5865068 | MDR-TB | lineage4.8 | None | ERR5897084 | Pre-XDR-TB | lineage4.9;lineage3 | None | ERR5865066 | MDR-TB | lineage4.8 | None | ERR5865065 | MDR-TB | lineage4.8 | None | ERR7361983 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7361958 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7361992 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7361990 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7737692 | MDR-TB | lineage4.1.1.3 | None | ERR7737679 | MDR-TB | lineage4.1.1.3 | None | ERR8975739 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR775335 | MDR-TB | lineage4.1.2.1 | pe | ERR7737897 | MDR-TB | lineage4.1.1.3 | None | ERR8774397 | MDR-TB | lineage4.1.1.3 | None | ERR8774480 | MDR-TB | lineage4.6.2.2 | None | ERR8976048 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9125624 | Other | lineage1.1.2 | None | ERR9030460 | MDR-TB | lineage1.1.2 | None | ERR9125418 | MDR-TB | lineage1.2.1.2.1 | None | ERR9992709 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR983237 | MDR-TB | lineage1.1.2 | None | ERR9992638 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992924 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992762 | XDR-TB | lineage4.1.1.3 | None | ERR9993054 | XDR-TB | lineage4.1.1.3 | None | ERR9993037 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992929 | XDR-TB | lineage4.1.1.3 | None | ERR9993044 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993087 | XDR-TB | lineage4.1.1.3 | None | ERR9993128 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993121 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1019158 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1011465 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1011469 | Other | lineage4.9 | None | SRR1019151 | MDR-TB | lineage4.1.1.3 | None | SRR1140965 | MDR-TB | lineage4.1.1.3 | None | SRR10315721 | MDR-TB | lineage4.1.1.3 | None | SRR10525358 | MDR-TB | lineage4.8 | None | SRR10869076 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR11349140 | MDR-TB | lineage4.1.1.3 | None | SRR11349141 | MDR-TB | lineage4.1.1.3 | None | SRR1140951 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10315667 | MDR-TB | lineage4.1.1.3 | None | SRR10315722 | MDR-TB | lineage4.1.1.3 | None | SRR1062837 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1062841 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR11349150 | MDR-TB | lineage4.1.1.3 | None | SRR1165274 | MDR-TB | lineage4.1.1.3 | None | SRR1162758 | MDR-TB | lineage3.1 | None | SRR1165209 | MDR-TB | lineage4.1.1.3 | None | SRR1165328 | MDR-TB | lineage4.1.1.3 | None | SRR1165290 | MDR-TB | lineage4.4.1.1.1 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165675 | MDR-TB | lineage4.1.1.3 | None | SRR1165673 | MDR-TB | lineage4.1.1.3 | None | SRR1165373 | MDR-TB | lineage3.1 | None | SRR1165336 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165631 | MDR-TB | lineage4.1.1.3 | None | SRR1165663 | MDR-TB | lineage4.1.1.3 | None | SRR1165683 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165691 | MDR-TB | lineage4.1.1.3 | None | SRR1165669 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165695 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1167260 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165714 | MDR-TB | lineage4.1.1.3 | None | SRR1166817 | MDR-TB | lineage3.1 | None | SRR1167069 | MDR-TB | lineage3.1 | None | SRR1165713 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1167254 | MDR-TB | lineage4.4.1.1.1 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | SRR1167266 | MDR-TB | lineage4.1.1.3 | None | SRR1167338 | MDR-TB | lineage4.1.1.3 | None | SRR1167279 | MDR-TB | lineage4.8;lineage4.1.1.3 | None | SRR1167307 | MDR-TB | lineage4.1.1 | None | SRR1167333 | MDR-TB | lineage4.1.1.3 | None | SRR1167368 | MDR-TB | lineage4.1.1.3 | None | SRR1169167 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1167366 | MDR-TB | lineage4.1.1.3 | None | SRR1169204 | MDR-TB | lineage4.1.1.3 | None | SRR1169190 | MDR-TB | lineage4.1.1.3 | None | SRR1169189 | MDR-TB | lineage4.1.1.3 | None | SRR1169256 | MDR-TB | lineage4.1.1.3 | None | SRR1169203 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169241 | MDR-TB | lineage4.1.1.3 | None | SRR1169261 | MDR-TB | lineage4.1.1.3 | None | SRR1169301 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169289 | MDR-TB | lineage4.1.1.3 | None | SRR1169272 | MDR-TB | lineage4.1.1.3 | None | SRR1173032 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1172247 | MDR-TB | lineage4.1.1.3 | None | SRR1172330 | MDR-TB | lineage4.1.1.3 | None | SRR1172836 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1172848 | MDR-TB | lineage1.1.2 | None | SRR1172873 | MDR-TB | lineage1.1.2 | None | SRR1172306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173407 | MDR-TB | lineage4.1.1.3 | None | SRR1173213 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173282 | MDR-TB | lineage4.4.1.1.1 | None | SRR1173441 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173554 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173456 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173724 | MDR-TB | lineage4.8;lineage4.1.1.3 | None | SRR1173624 | MDR-TB | lineage4.1.1.3 | None | SRR1173587 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173736 | MDR-TB | lineage4.1.1.3 | None | SRR1173737 | MDR-TB | lineage4.1.1.3 | None | SRR1181086 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1180232 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1180940 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173861 | MDR-TB | lineage4.8;lineage4.1.1.3 | None | SRR1173876 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1180152 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1183090 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1181322 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1183001 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11081912 | MDR-TB | lineage3.1 | None | SRR1196541 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16058316 | MDR-TB | lineage1.2.1.2.1 | None | SRR1184019 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1184339 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR15014652 | MDR-TB | lineage4.9 | None | SRR15316455 | HR-TB | lineage4.5 | None | SRR16058448 | Other | lineage1.1.2 | None | SRR22424941 | Pre-XDR-TB | lineage1.1.2 | None | ERR9806778 | MDR-TB | lineage4.9 | None | ERR11082668 | Pre-XDR-TB | lineage4.1.3 | None | ERR9806692 | MDR-TB | lineage4.1.1.3 | None | ERR9806781 | MDR-TB | lineage4.1.1 | None | ERR10610096 | MDR-TB | lineage4.9 | None | ERR10610193 | MDR-TB | lineage4.1.1 | None | ERR551246 | MDR-TB | lineage4.1.1.3 | sz | ERR4896315 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10610374 | MDR-TB | lineage4.1.1.3 | None | ERR550864 | MDR-TB | lineage4.1.1.3 | sz | ERR1465791 | HR-TB | lineage4.1.2.1 | ch | ERR550813 | MDR-TB | lineage4.1.1.3 | sz | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SAMN02403520 | MDR-TB | lineage4.4.1.1.1 | za | SAMN02403576 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02403541 | MDR-TB | lineage4.1.1.3 | za | ERR552994 | MDR-TB | lineage4.1.1.3 | sz | ERR553328 | MDR-TB | lineage4.1.1.3 | None | ERR553186 | MDR-TB | lineage4.1.1.3 | sz | SAMN02350428 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02585963 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02350483 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR5485595 | RR-TB | None | ERR553105 | MDR-TB | lineage4.1.1.3 | sz | ERR212108 | RR-TB | lineage1.2.2.1 | mw | SAMN02403522 | MDR-TB | lineage4.1.1.3 | za | ERR550734 | MDR-TB | lineage4.1.1.3 | sz | ERR2510135 | MDR-TB | lineage4.1.2.1 | pe | SRR5485447 | MDR-TB | None | SAMN02403546 | MDR-TB | lineage4.1.1.3 | za | ERR2510568 | Pre-XDR-TB | lineage3 | pk | ERR552075 | MDR-TB | lineage4.1.1.3 | None | ERR2510705 | Pre-XDR-TB | lineage4.8 | it | ERR552296 | Pre-XDR-TB | lineage4.1.1.3 | sz | SRR5073912 | Other | lineage1.1.1.1 | vn | ERR2433008 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02586027 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR552720 | MDR-TB | lineage4.1.1.3 | sz | ERR552917 | MDR-TB | lineage4.1.1.3 | sz | SAMN02403533 | MDR-TB | lineage4.1.1.3 | za | ERR552151 | MDR-TB | lineage4.1.1.3 | sz | SRR5485475 | Other | None | SAMN02599179 | MDR-TB | lineage1.1.2 | None | SRR5074117 | Other | lineage1.1.1.1 | vn | SAMN02403545 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR2515346 | MDR-TB | lineage4.1.1.3 | za | SRR5065236 | HR-TB | lineage1.1.1.1 | vn | SAMN02403523 | MDR-TB | lineage4.1.1.3 | za | ERR552361 | MDR-TB | lineage4.1.1.3 | sz | SAMN02350472 | MDR-TB | lineage4.1.1.3 | za | ERR2515425 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515386 | MDR-TB | lineage4.1.1.3 | za | SAMN02053765 | MDR-TB | lineage4.1.1.3 | za | ERR550959 | MDR-TB | lineage4.1.1.3 | sz | ERR2515479 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR553028 | MDR-TB | lineage4.1.1.3 | sz | ERR2516583 | MDR-TB | lineage4.8 | nl | ERR2515597 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02585992 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515794 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR552182 | MDR-TB | lineage4.1.1.3 | None | ERR2515826 | Pre-XDR-TB | lineage4.1.1.3 | za |
|---|
