EBG00000313325 - n.878G>A


Drug resistance types
0 Sensitive 4 RR-TB 7 HR-TB 183 MDR-TB 94 Pre-XDR-TB 9 XDR-TB 9 Other
lineage Counts
lineage Count
lineage1.1.1 2
lineage4.1.1.3 231
lineage4.1.2.1 9
lineage4.8 12
lineage3.1 6
lineage1.1.2 10
lineage4.1.3 1
lineage4.5 1
lineage3 4
lineage4.1.1;lineage4.9 2
lineage4.1.1.3;lineage4.8 4
lineage1.2.1.2.1 5
lineage1.2.2.2 1
lineage4.6.2.2 2
lineage4.9 2
lineage4.4.1.1.1 4
lineage4.4 1
lineage1.2.1.2 2
lineage1.1.1.1 3
lineage3;lineage4.9 1
lineage4.3.4.2.1 1
lineage4 1
lineage1.2.2.1 1
spoligotype Counts
spoligotype Count
None 306
Geographic prevalence
Country level data for this variant is available for 75 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR11662581 MDR-TB lineage1.1.1 None
ERR7737692 MDR-TB lineage4.1.1.3 None
SRR924217 Pre-XDR-TB lineage4.1.1.3 None
ERR9992762 XDR-TB lineage4.1.1.3 None
SRR1011465 Pre-XDR-TB lineage4.1.1.3 None
ERR553342 MDR-TB lineage4.1.1.3 None
SAMN02586027 Pre-XDR-TB lineage4.1.1.3 za
SRR1165691 MDR-TB lineage4.1.1.3 None
ERR10680219 RR-TB lineage4.1.2.1 None
SRR9738484 MDR-TB lineage4.8 None
ERR552073 MDR-TB lineage4.1.1.3 sz
SAMN02403523 MDR-TB lineage4.1.1.3 za
ERR2199778 MDR-TB lineage4.1.1.3 None
ERR4020192 MDR-TB lineage4.1.1.3 None
ERR550959 MDR-TB lineage4.1.1.3 sz
SRR1165663 MDR-TB lineage4.1.1.3 None
ERR553028 MDR-TB lineage4.1.1.3 sz
ERR3132148 MDR-TB lineage4.1.2.1 None
ERR4809065 MDR-TB lineage4.1.1.3 za
SRR1169189 MDR-TB lineage4.1.1.3 None
ERR4830549 MDR-TB lineage4.1.1.3 None
SRR1183090 Pre-XDR-TB lineage4.1.1.3 None
ERR11488904 MDR-TB lineage4.1.1.3 None
ERR4020190 MDR-TB lineage4.1.1.3 None
SRR1167338 MDR-TB lineage4.1.1.3 None
SRR11349150 MDR-TB lineage4.1.1.3 None
SRR1169167 MDR-TB lineage4.1.1.3 None
SRR1173737 MDR-TB lineage4.1.1.3 None
ERR11488551 MDR-TB lineage4.1.1.3 None
ERR4829005 Pre-XDR-TB lineage4.8 None
ERR551938 MDR-TB lineage4.1.1.3 sz
SAMN02403532 Pre-XDR-TB lineage4.1.1.3 za
ERR5865067 MDR-TB lineage4.8 None
ERR11488862 Pre-XDR-TB lineage4.1.1.3 None
SRR1167271 MDR-TB lineage4.1.1.3 None
SRR1169190 MDR-TB lineage4.1.1.3 None
SAMN02585970 Pre-XDR-TB lineage4.1.1.3 za
ERR5865065 MDR-TB lineage4.8 None
SRR9971246 MDR-TB lineage4.1.1.3 None
ERR9992638 XDR-TB lineage4.1.1.3 None
SRR1173736 MDR-TB lineage4.1.1.3 None
SRR1181322 Pre-XDR-TB lineage4.1.1.3 None
ERR11081912 MDR-TB lineage3.1 None
SRR1165714 MDR-TB lineage4.1.1.3 None
SRR1169241 HR-TB lineage4.1.1.3 None
ERR11488649 MDR-TB lineage4.1.1.3 None
SRR1167333 MDR-TB lineage4.1.1.3 None
ERR9993054 XDR-TB lineage4.1.1.3 None
ERR8976048 Pre-XDR-TB lineage4.1.1.3 None
ERR4020193 MDR-TB lineage4.1.1.3 None
ERR2510705 Pre-XDR-TB lineage4.8 it
SRR1172848 MDR-TB lineage1.1.2 None
ERR551246 MDR-TB lineage4.1.1.3 sz
ERR552074 MDR-TB lineage4.1.1.3 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR11082668 Pre-XDR-TB lineage4.1.3 None
SRR15316455 HR-TB lineage4.5 None
ERR550864 MDR-TB lineage4.1.1.3 sz
SRR1196541 Pre-XDR-TB lineage4.1.1.3 None
ERR3335769 Pre-XDR-TB lineage3 pk
SRR1184019 Pre-XDR-TB lineage4.1.1.3 None
ERR2515479 Pre-XDR-TB lineage4.1.1.3 za
ERR4830532 MDR-TB lineage4.1.1.3 za
SRR1173441 Pre-XDR-TB lineage4.1.1.3 None
ERR553356 Other lineage4.1.1;lineage4.9 None
ERR11044001 MDR-TB lineage1.1.2 None
ERR551241 MDR-TB lineage4.1.1.3 sz
SAMN02403576 Pre-XDR-TB lineage4.1.1.3 None
SAMN02585963 Pre-XDR-TB lineage4.1.1.3 za
SAMN02350483 Pre-XDR-TB lineage4.1.1.3 za
ERR2200064 MDR-TB lineage4.1.1.3 None
SRR6896240 Pre-XDR-TB lineage4.1.1.3 None
SRR1167266 MDR-TB lineage4.1.1.3 None
ERR552289 MDR-TB lineage4.1.1.3 None
ERR11488754 MDR-TB lineage4.1.1.3 None
SAMN02403522 MDR-TB lineage4.1.1.3 za
SRR1019151 MDR-TB lineage4.1.1.3 None
SRR10315722 MDR-TB lineage4.1.1.3 None
ERR550734 MDR-TB lineage4.1.1.3 sz
SRR1173724 MDR-TB lineage4.1.1.3;lineage4.8 None
ERR4020195 Pre-XDR-TB lineage4.1.1.3 None
SRR1169204 MDR-TB lineage4.1.1.3 None
ERR9992709 Pre-XDR-TB lineage4.1.1.3 None
DRR130131 MDR-TB lineage1.2.1.2.1 None
ERR11488372 Pre-XDR-TB lineage1.2.2.2 None
SRR7592325 MDR-TB lineage4.8 None
SRR9971237 Pre-XDR-TB lineage4.1.1.3 None
SRR9971369 MDR-TB lineage4.1.1.3 None
ERR553205 MDR-TB lineage4.1.1.3 None
SRR10315721 MDR-TB lineage4.1.1.3 None
ERR553204 MDR-TB lineage4.1.1.3 sz
SAMN02414990 MDR-TB lineage3.1 se
ERR11488464 MDR-TB lineage4.1.1.3 None
SAMN02403533 MDR-TB lineage4.1.1.3 za
SRR1172306 HR-TB lineage4.1.1.3 None
ERR3335739 Pre-XDR-TB lineage3 pk
SRR1173456 Pre-XDR-TB lineage4.1.1.3 None
SRR1180152 Pre-XDR-TB lineage4.1.1.3 None
ERR5865066 MDR-TB lineage4.8 None
SRR1167279 MDR-TB lineage4.1.1.3;lineage4.8 None
ERR9993037 XDR-TB lineage4.1.1.3 None
SRR1165669 Pre-XDR-TB lineage4.1.1.3 None
SRR9971050 MDR-TB lineage4.1.1.3 None
ERR9993044 Pre-XDR-TB lineage4.1.1.3 None
ERR2515990 Pre-XDR-TB lineage4.1.1.3 za
ERR4423759 MDR-TB lineage4.6.2.2 None
ERR11488460 MDR-TB lineage4.1.1.3 None
ERR775335 MDR-TB lineage4.1.2.1 pe
SRR1173407 MDR-TB lineage4.1.1.3 None
ERR552288 MDR-TB lineage4.1.1.3 sz
SRR9971181 MDR-TB lineage4.1.1.3 None
ERR552993 MDR-TB lineage4.1.1.3 None
ERR11488851 Pre-XDR-TB lineage4.1.1.3 None
SRR1140951 Pre-XDR-TB lineage4.1.1.3 None
SAMN02350472 MDR-TB lineage4.1.1.3 za
ERR11488409 MDR-TB lineage4.1.1.3 None
ERR552361 MDR-TB lineage4.1.1.3 sz
ERR551937 MDR-TB lineage4.1.1.3 None
SAMN02053765 MDR-TB lineage4.1.1.3 za
SRR16058316 MDR-TB lineage1.2.1.2.1 None
ERR552181 MDR-TB lineage4.1.1.3 None
SRR1169289 MDR-TB lineage4.1.1.3 None
ERR11488597 Pre-XDR-TB lineage4.1.1.3 None
ERR11488560 MDR-TB lineage4.1.1.3 None
SRR1173624 MDR-TB lineage4.1.1.3 None
SRR9971128 MDR-TB lineage4.1.1.3 None
ERR4809172 MDR-TB lineage4.1.1.3 za
ERR4830531 MDR-TB lineage4.1.1.3 None
ERR8774397 MDR-TB lineage4.1.1.3 None
ERR2516583 MDR-TB lineage4.8 nl
ERR2515386 MDR-TB lineage4.1.1.3 za
ERR2653163 HR-TB lineage4.9 None
ERR3335743 Pre-XDR-TB lineage3 pk
ERR11488546 Pre-XDR-TB lineage4.1.1.3 None
SAMN02403525 Pre-XDR-TB lineage4.1.1.3 None
ERR11488499 Pre-XDR-TB lineage4.1.1.3 None
SRR28646093 MDR-TB lineage4.8 None
SAMN01925645 Pre-XDR-TB lineage4.1.1.3 None
ERR11773707 Pre-XDR-TB lineage4.1.1.3 None
SRR1165631 MDR-TB lineage4.1.1.3 None
SRR1173587 Pre-XDR-TB lineage4.1.1.3 None
SRR1169301 Pre-XDR-TB lineage4.1.1.3 None
SRR1173282 MDR-TB lineage4.4.1.1.1 None
ERR11488586 Pre-XDR-TB lineage4.1.1.3 None
ERR553029 MDR-TB lineage4.1.1.3 None
SRR1181086 Pre-XDR-TB lineage4.1.1.3 None
ERR3287571 MDR-TB lineage4.1.2.1 None
ERR552994 MDR-TB lineage4.1.1.3 sz
ERR9993128 Pre-XDR-TB lineage4.1.1.3 None
SRR1165675 MDR-TB lineage4.1.1.3 None
SRR1169256 MDR-TB lineage4.1.1.3 None
SRR1183001 Pre-XDR-TB lineage4.1.1.3 None
ERR553328 MDR-TB lineage4.1.1.3 None
SRR1140965 MDR-TB lineage4.1.1.3 None
ERR553354 MDR-TB lineage4.1.1.3 sz
SRR5341306 Pre-XDR-TB lineage4.4 None
ERR553186 MDR-TB lineage4.1.1.3 sz
SRR1167366 MDR-TB lineage4.1.1.3 None
ERR9993121 XDR-TB lineage4.1.1.3 None
SRR1172247 MDR-TB lineage4.1.1.3 None
ERR4896315 Pre-XDR-TB lineage4.1.1.3 None
ERR1465791 HR-TB lineage4.1.2.1 ch
ERR9125418 MDR-TB lineage1.2.1.2.1 None
SRR16058448 Other lineage1.1.2 None
ERR2199805 MDR-TB lineage4.1.1.3 None
SAMN02403541 MDR-TB lineage4.1.1.3 za
SRR1184339 Pre-XDR-TB lineage4.1.1.3 None
ERR5865068 MDR-TB lineage4.8 None
SRR15014652 MDR-TB lineage4.9 None
SRR6152927 Other lineage1.2.1.2 ca
SRR1173861 MDR-TB lineage4.1.1.3;lineage4.8 None
ERR11488358 Pre-XDR-TB lineage4.1.1.3 None
SRR1165336 Pre-XDR-TB lineage4.1.1.3 None
SRR5073912 Other lineage1.1.1.1 vn
ERR553185 MDR-TB lineage4.1.1.3 None
SAMN02350428 Pre-XDR-TB lineage4.1.1.3 za
ERR553105 MDR-TB lineage4.1.1.3 sz
SRR9971038 MDR-TB lineage4.1.1.3 None
ERR2515597 Pre-XDR-TB lineage4.1.1.3 za
ERR7737679 MDR-TB lineage4.1.1.3 None
SRR1165274 MDR-TB lineage4.1.1.3 None
ERR7737897 MDR-TB lineage4.1.1.3 None
ERR5897084 Pre-XDR-TB lineage3;lineage4.9 None
ERR11488467 Pre-XDR-TB lineage4.1.1.3 None
ERR553330 MDR-TB lineage4.1.1.3 None
ERR9125624 Other lineage1.1.2 None
ERR2515346 MDR-TB lineage4.1.1.3 za
ERR552295 Pre-XDR-TB lineage4.1.1.3 None
ERR11488410 MDR-TB lineage4.1.1.3 None
SAMN02403546 MDR-TB lineage4.1.1.3 za
ERR11488540 Pre-XDR-TB lineage4.1.1.3 None
SRR1062837 Pre-XDR-TB lineage4.1.1.3 None
SRR847790 Pre-XDR-TB lineage4.1.1.3 za
ERR552075 MDR-TB lineage4.1.1.3 None
ERR4796913 Pre-XDR-TB lineage4.1.1.3 in
SRR1166817 MDR-TB lineage3.1 None
SRR1180232 Pre-XDR-TB lineage4.1.1.3 None
ERR4809202 MDR-TB lineage4.1.1.3 za
ERR10680028 RR-TB lineage4.1.2.1 None
ERR2515425 Pre-XDR-TB lineage4.1.1.3 za
SRR1172873 MDR-TB lineage1.1.2 None
ERR11488954 XDR-TB lineage4.1.1.3 None
SRR11349140 MDR-TB lineage4.1.1.3 None
ERR2510135 MDR-TB lineage4.1.2.1 pe
SRR9971086 MDR-TB lineage4.1.1.3 None
ERR10610374 MDR-TB lineage4.1.1.3 None
SRR1173876 Pre-XDR-TB lineage4.1.1.3 None
ERR7361992 Pre-XDR-TB lineage4.1.1.3 None
ERR9992924 Pre-XDR-TB lineage4.1.1.3 None
SAMN02403545 Pre-XDR-TB lineage4.1.1.3 None
SRR11662202 MDR-TB lineage1.1.1 None
ERR4809200 MDR-TB lineage4.1.1.3 za
ERR552916 MDR-TB lineage4.1.1.3 None
SRR1165328 MDR-TB lineage4.1.1.3;lineage4.8 None
SRR1165373 MDR-TB lineage3.1 None
SRR1165713 Pre-XDR-TB lineage4.1.1.3 None
SAMN02585992 Pre-XDR-TB lineage4.1.1.3 za
ERR11488513 Pre-XDR-TB lineage4.1.1.3 None
ERR552182 MDR-TB lineage4.1.1.3 None
ERR8774480 MDR-TB lineage4.6.2.2 None
ERR4822342 MDR-TB lineage1.2.1.2.1 None
ERR2199751 MDR-TB lineage4.1.1.3 None
ERR4020196 MDR-TB lineage4.1.1.3 None
ERR553264 MDR-TB lineage4.1.1.3 sz
ERR10680015 RR-TB lineage4.1.2.1 None
ERR11488878 Pre-XDR-TB lineage4.1.1.3 None
ERR1023386 Other lineage4.3.4.2.1 None
ERR552751 MDR-TB lineage4.1.1.3 sz
ERR7361990 Pre-XDR-TB lineage4.1.1.3 None
ERR983237 MDR-TB lineage1.1.2 None
ERR553343 MDR-TB lineage4.1.1.3 sz
SRR1169261 MDR-TB lineage4.1.1.3 None
ERR2199988 MDR-TB lineage4.1.1.3 None
SAMN02350424 Pre-XDR-TB lineage4.1.1.3 za
SRR26331642 MDR-TB lineage4.1.1.3 None
ERR9992929 XDR-TB lineage4.1.1.3 None
ERR11488733 MDR-TB lineage4.1.1.3 None
ERR11488416 MDR-TB lineage4.1.1.3 None
SRR28498523 HR-TB lineage4.1.2.1 None
SRR28394207 MDR-TB lineage4 None
ERR11773743 XDR-TB lineage4.1.1.3 None
SRR9971331 MDR-TB lineage4.1.1.3 None
SRR1172330 MDR-TB lineage4.1.1.3 None
ERR550813 MDR-TB lineage4.1.1.3 sz
SRR1165306 Pre-XDR-TB lineage4.1.1.3 None
ERR553355 MDR-TB lineage4.1.1.3 None
SAMN02403520 MDR-TB lineage4.4.1.1.1 za
ERR11043545 MDR-TB lineage3.1 None
SRR10315667 MDR-TB lineage4.1.1.3 None
SRR7592347 Pre-XDR-TB lineage4.8 None
SRR24799237 Other lineage1.1.2 None
SRR1173213 Pre-XDR-TB lineage4.1.1.3 None
ERR2200061 MDR-TB lineage4.1.1.3 None
ERR9806692 MDR-TB lineage4.1.1.3 None
ERR2199750 Other lineage4.1.1;lineage4.9 None
SRR5817479 MDR-TB lineage1.2.1.2 au
ERR2515794 Pre-XDR-TB lineage4.1.1.3 za
SAMN02403577 MDR-TB lineage4.1.1.3 za
ERR11488677 Pre-XDR-TB lineage4.1.1.3 None
ERR4809073 MDR-TB lineage4.1.1.3 za
ERR2515826 Pre-XDR-TB lineage4.1.1.3 za
ERR550637 MDR-TB lineage4.1.1.3 None
SRR11349141 MDR-TB lineage4.1.1.3 None
ERR11488610 Pre-XDR-TB lineage4.1.1.3 None
SRR1167260 Pre-XDR-TB lineage4.1.1.3 None
ERR8975739 Pre-XDR-TB lineage4.1.1.3 None
SRR1167307 MDR-TB lineage4.1.1.3 None
SRR1167254 MDR-TB lineage4.4.1.1.1 None
ERR551393 MDR-TB lineage4.1.1.3 sz
SRR1062841 Pre-XDR-TB lineage4.1.1.3 None
ERR4020191 MDR-TB lineage4.1.1.3 None
SRR10525358 MDR-TB lineage4.8 None
SRR1173032 Pre-XDR-TB lineage4.1.1.3 None
SRR1180940 Pre-XDR-TB lineage4.1.1.3 None
SRR9971048 MDR-TB lineage4.1.1.3 None
SRR1165695 Pre-XDR-TB lineage4.1.1.3 None
SRR1169272 MDR-TB lineage4.1.1.3 None
ERR550863 MDR-TB lineage4.1.1.3 None
SRR1165209 MDR-TB lineage4.1.1.3 None
SRR7496513 MDR-TB lineage1.2.1.2.1 us
SRR22424941 Pre-XDR-TB lineage1.1.2 None
SRR1167368 MDR-TB lineage4.1.1.3 None
ERR552720 MDR-TB lineage4.1.1.3 sz
ERR551240 MDR-TB lineage4.1.1.3 None
SRR1169203 Pre-XDR-TB lineage4.1.1.3 None
ERR552917 MDR-TB lineage4.1.1.3 sz
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR1035108 Other lineage1.1.1.1 vn
SRR833068 MDR-TB lineage4.1.1.3 None
SRR5065236 HR-TB lineage1.1.1.1 vn
SRR1167069 MDR-TB lineage3.1 None
SRR5341359 Pre-XDR-TB lineage1.1.2 in
ERR552151 MDR-TB lineage4.1.1.3 sz
SRR833056 MDR-TB lineage4.1.1.3 None
ERR212108 RR-TB lineage1.2.2.1 mw
ERR7361958 Pre-XDR-TB lineage4.1.1.3 None
ERR9993087 XDR-TB lineage4.1.1.3 None
SRR1165290 MDR-TB lineage4.4.1.1.1 None
ERR4020194 MDR-TB lineage4.1.1.3 None
ERR11488914 Pre-XDR-TB lineage4.1.1.3 None
SAMN02599179 MDR-TB lineage1.1.2 None
ERR4423717 MDR-TB lineage4.1.1.3 None
SRR1172836 Pre-XDR-TB lineage4.1.1.3 None
ERR2510568 Pre-XDR-TB lineage3 pk
ERR552296 Pre-XDR-TB lineage4.1.1.3 sz
ERR2433008 Pre-XDR-TB lineage4.1.1.3 None