EBG00000313325 - n.878G>A


Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
0 Sensitive 3 RR-TB 7 HR-TB 189 MDR-TB 103 Pre-XDR-TB 10 XDR-TB 7 Other
lineage Counts
lineage Count
lineage4.1.1.3 243
lineage4.8 13
lineage3;lineage4.9 1
lineage3.1 7
lineage4.1.2.1 7
lineage1.2.1.2.1 6
lineage4.5 1
lineage4.1.1.3;lineage4.8 4
lineage4.4.1.1.1 4
lineage1.1.2 8
lineage4.3.4.2.1 1
lineage1.2.1.2 1
lineage4.6.2.2 2
lineage1.1.1 3
lineage1.1.1.1 3
lineage4.1.3 2
lineage1.2.2.2 1
lineage4.4 1
lineage3 4
lineage4.9 2
lineage4 1
lineage4.1.1;lineage4.9 2
lineage1.1.3.1 1
lineage2.2;lineage3 1
spoligotype Counts
spoligotype Count
None 319
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4809065 MDR-TB lineage4.1.1.3 za
SRR28646093 MDR-TB lineage4.8 None
SAMN01925645 Pre-XDR-TB lineage4.1.1.3 None
ERR11773707 Pre-XDR-TB lineage4.1.1.3 None
ERR4809200 MDR-TB lineage4.1.1.3 za
ERR4809202 MDR-TB lineage4.1.1.3 za
ERR5897084 Pre-XDR-TB lineage3;lineage4.9 None
ERR11488597 Pre-XDR-TB lineage4.1.1.3 None
ERR9993037 XDR-TB lineage4.1.1.3 None
SAMN02350424 Pre-XDR-TB lineage4.1.1.3 za
SRR1165209 MDR-TB lineage4.1.1.3 None
SRR1165373 MDR-TB lineage3.1 None
ERR1465791 HR-TB lineage4.1.2.1 ch
ERR2515990 Pre-XDR-TB lineage4.1.1.3 za
ERR2515794 Pre-XDR-TB lineage4.1.1.3 za
ERR2515479 Pre-XDR-TB lineage4.1.1.3 za
ERR2515597 Pre-XDR-TB lineage4.1.1.3 za
ERR2515826 Pre-XDR-TB lineage4.1.1.3 za
ERR2515386 MDR-TB lineage4.1.1.3 za
ERR2515425 Pre-XDR-TB lineage4.1.1.3 za
SRR1169204 MDR-TB lineage4.1.1.3 None
SRR7496513 MDR-TB lineage1.2.1.2.1 us
ERR2199751 MDR-TB lineage4.1.1.3 None
SRR15316455 HR-TB lineage4.5 None
SRR1165328 MDR-TB lineage4.1.1.3;lineage4.8 None
ERR11488733 MDR-TB lineage4.1.1.3 None
SRR1173624 MDR-TB lineage4.1.1.3 None
SRR1165306 Pre-XDR-TB lineage4.1.1.3 None
ERR11488586 Pre-XDR-TB lineage4.1.1.3 None
SRR7592347 Pre-XDR-TB lineage4.8 None
SRR1181086 Pre-XDR-TB lineage4.1.1.3 None
ERR552182 MDR-TB lineage4.1.1.3 None
ERR9993128 Pre-XDR-TB lineage4.1.1.3 None
ERR2199988 MDR-TB lineage4.1.1.3 None
SRR1165290 MDR-TB lineage4.4.1.1.1 None
ERR9125418 MDR-TB lineage1.2.1.2.1 None
ERR10680219 RR-TB lineage4.1.2.1 None
ERR553330 MDR-TB lineage4.1.1.3 None
ERR11488677 Pre-XDR-TB lineage4.1.1.3 None
SRR1183001 Pre-XDR-TB lineage4.1.1.3 None
SRR1172247 MDR-TB lineage4.1.1.3 None
ERR4896315 Pre-XDR-TB lineage4.1.1.3 None
ERR4020191 MDR-TB lineage4.1.1.3 None
SRR10525358 MDR-TB lineage4.8 None
SRR1167260 Pre-XDR-TB lineage4.1.1.3 None
SRR1173032 Pre-XDR-TB lineage4.1.1.3 None
SRR1167271 MDR-TB lineage4.1.1.3 None
SRR1165336 Pre-XDR-TB lineage4.1.1.3 None
SRR1180940 Pre-XDR-TB lineage4.1.1.3 None
ERR552075 MDR-TB lineage4.1.1.3 None
ERR11488754 MDR-TB lineage4.1.1.3 None
SRR29096161 Pre-XDR-TB lineage4.1.1.3 None
ERR9992762 XDR-TB lineage4.1.1.3 None
SRR1165691 MDR-TB lineage4.1.1.3 None
SRR1169261 MDR-TB lineage4.1.1.3 None
ERR553205 MDR-TB lineage4.1.1.3 None
ERR4020193 MDR-TB lineage4.1.1.3 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
SRR833068 MDR-TB lineage4.1.1.3 None
ERR11488711 Pre-XDR-TB lineage4.1.1.3 None
SRR1167069 MDR-TB lineage3.1 None
SRR847790 Pre-XDR-TB lineage4.1.1.3 za
SRR10315722 MDR-TB lineage4.1.1.3 None
SRR10315721 MDR-TB lineage4.1.1.3 None
ERR5865066 MDR-TB lineage4.8 None
SAMN02403545 Pre-XDR-TB lineage4.1.1.3 None
SAMN02403525 Pre-XDR-TB lineage4.1.1.3 None
SAMN02599179 MDR-TB lineage1.1.2 None
SRR29274001 MDR-TB lineage4.8 None
SRR924217 Pre-XDR-TB lineage4.1.1.3 None
ERR11773743 XDR-TB lineage4.1.1.3 None
ERR553342 MDR-TB lineage4.1.1.3 None
ERR9993044 Pre-XDR-TB lineage4.1.1.3 None
ERR10610374 MDR-TB lineage4.1.1.3 None
SRR9971369 MDR-TB lineage4.1.1.3 None
SRR29772629 MDR-TB lineage1.1.2 None
ERR552916 MDR-TB lineage4.1.1.3 None
ERR11488560 MDR-TB lineage4.1.1.3 None
ERR11488409 MDR-TB lineage4.1.1.3 None
SRR1165713 Pre-XDR-TB lineage4.1.1.3 None
SRR1183090 Pre-XDR-TB lineage4.1.1.3 None
ERR4020190 MDR-TB lineage4.1.1.3 None
SRR11349150 MDR-TB lineage4.1.1.3 None
ERR4796913 Pre-XDR-TB lineage4.1.1.3 in
ERR8774397 MDR-TB lineage4.1.1.3 None
ERR11488513 Pre-XDR-TB lineage4.1.1.3 None
ERR7361992 Pre-XDR-TB lineage4.1.1.3 None
SRR1169301 Pre-XDR-TB lineage4.1.1.3 None
ERR11488551 MDR-TB lineage4.1.1.3 None
SRR1165683 Pre-XDR-TB lineage4.1.1.3 None
ERR11488862 Pre-XDR-TB lineage4.1.1.3 None
ERR11044001 MDR-TB lineage1.1.2 None
ERR11488410 MDR-TB lineage4.1.1.3 None
ERR2200064 MDR-TB lineage4.1.1.3 None
ERR7361990 Pre-XDR-TB lineage4.1.1.3 None
SRR1173736 MDR-TB lineage4.1.1.3 None
SAMN02414990 MDR-TB lineage3.1 se
SAMN02403577 MDR-TB lineage4.1.1.3 za
ERR11488499 Pre-XDR-TB lineage4.1.1.3 None
ERR11488416 MDR-TB lineage4.1.1.3 None
SRR28498523 HR-TB lineage4.1.2.1 None
ERR3287571 MDR-TB lineage4.1.2.1 None
ERR1023386 Other lineage4.3.4.2.1 None
ERR8975739 Pre-XDR-TB lineage4.1.1.3 None
ERR553029 MDR-TB lineage4.1.1.3 None
SRR1165663 MDR-TB lineage4.1.1.3 None
ERR8976048 Pre-XDR-TB lineage4.1.1.3 None
ERR5865068 MDR-TB lineage4.8 None
ERR9992929 XDR-TB lineage4.1.1.3 None
ERR552994 MDR-TB lineage4.1.1.3 sz
ERR553264 MDR-TB lineage4.1.1.3 sz
ERR550734 MDR-TB lineage4.1.1.3 sz
SRR5817479 MDR-TB lineage1.2.1.2 au
SRR1062841 Pre-XDR-TB lineage4.1.1.3 None
ERR9992924 Pre-XDR-TB lineage4.1.1.3 None
ERR11488878 Pre-XDR-TB lineage4.1.1.3 None
SAMN02053765 MDR-TB lineage4.1.1.3 za
ERR11488851 Pre-XDR-TB lineage4.1.1.3 None
ERR4423717 MDR-TB lineage4.1.1.3 None
SAMN02350472 MDR-TB lineage4.1.1.3 za
SAMN02350483 Pre-XDR-TB lineage4.1.1.3 za
SAMN02585970 Pre-XDR-TB lineage4.1.1.3 za
SAMN02586027 Pre-XDR-TB lineage4.1.1.3 za
SRR1173282 MDR-TB lineage4.4.1.1.1 None
ERR8774480 MDR-TB lineage4.6.2.2 None
SRR11662581 MDR-TB lineage1.1.1 None
SRR1169256 MDR-TB lineage4.1.1.3 None
SRR1180232 Pre-XDR-TB lineage4.1.1.3 None
SRR5065236 HR-TB lineage1.1.1.1 vn
SRR16058316 MDR-TB lineage1.2.1.2.1 None
SRR9971331 MDR-TB lineage4.1.1.3 None
SRR9971048 MDR-TB lineage4.1.1.3 None
SRR1172330 MDR-TB lineage4.1.1.3 None
SRR5073912 Other lineage1.1.1.1 vn
SRR5074117 Other lineage1.1.1.1 vn
ERR9993121 XDR-TB lineage4.1.1.3 None
SRR10315667 MDR-TB lineage4.1.1.3 None
ERR553328 MDR-TB lineage4.1.1.3 None
SRR24799237 Other lineage1.1.2 None
ERR9992709 Pre-XDR-TB lineage4.1.1.3 None
ERR4020196 MDR-TB lineage4.1.1.3 None
ERR13289015 Pre-XDR-TB lineage4.1.1.3 None
SRR1173587 Pre-XDR-TB lineage4.1.1.3 None
SRR1167366 MDR-TB lineage4.1.1.3 None
SRR11349140 MDR-TB lineage4.1.1.3 None
DRR130131 MDR-TB lineage1.2.1.2.1 None
SRR833056 MDR-TB lineage4.1.1.3 None
ERR11082668 Pre-XDR-TB lineage4.1.3 None
ERR13253298 MDR-TB lineage1.2.1.2.1 None
ERR551937 MDR-TB lineage4.1.1.3 None
SRR9971038 MDR-TB lineage4.1.1.3 None
SRR9971181 MDR-TB lineage4.1.1.3 None
ERR983237 MDR-TB lineage1.1.2 None
SRR1167338 MDR-TB lineage4.1.1.3 None
SRR1169189 MDR-TB lineage4.1.1.3 None
SRR1173861 MDR-TB lineage4.1.1.3;lineage4.8 None
SRR6896240 Pre-XDR-TB lineage4.1.1.3 None
ERR9806692 MDR-TB lineage4.1.1.3 None
SRR1165695 Pre-XDR-TB lineage4.1.1.3 None
SRR1019151 MDR-TB lineage4.1.1.3 None
SRR1169272 MDR-TB lineage4.1.1.3 None
SRR1167368 MDR-TB lineage4.1.1.3 None
SRR29096901 Other lineage1.1.1 None
SRR29093408 Pre-XDR-TB lineage4.1.1.3 None
ERR11488372 Pre-XDR-TB lineage1.2.2.2 None
ERR11488610 Pre-XDR-TB lineage4.1.1.3 None
SRR1169203 Pre-XDR-TB lineage4.1.1.3 None
SRR1166817 MDR-TB lineage3.1 None
SRR1165669 Pre-XDR-TB lineage4.1.1.3 None
SRR1167279 MDR-TB lineage4.1.1.3;lineage4.8 None
SRR1165631 MDR-TB lineage4.1.1.3 None
SRR1165675 MDR-TB lineage4.1.1.3 None
ERR13285053 MDR-TB lineage3.1 None
ERR13289281 XDR-TB lineage4.1.1.3 None
ERR2433008 Pre-XDR-TB lineage4.1.1.3 None
SAMN02403576 Pre-XDR-TB lineage4.1.1.3 None
ERR4829005 Pre-XDR-TB lineage4.8 None
SRR5341306 Pre-XDR-TB lineage4.4 None
ERR552993 MDR-TB lineage4.1.1.3 None
SRR1172306 HR-TB lineage4.1.1.3 None
ERR4020192 MDR-TB lineage4.1.1.3 None
SRR1062837 Pre-XDR-TB lineage4.1.1.3 None
ERR3335743 Pre-XDR-TB lineage3 pk
ERR3335769 Pre-XDR-TB lineage3 pk
ERR2510568 Pre-XDR-TB lineage3 pk
ERR5865067 MDR-TB lineage4.8 None
SRR9971246 MDR-TB lineage4.1.1.3 None
ERR9992638 XDR-TB lineage4.1.1.3 None
SRR15014652 MDR-TB lineage4.9 None
SRR1165714 MDR-TB lineage4.1.1.3 None
SRR1169241 HR-TB lineage4.1.1.3 None
SAMN02585992 Pre-XDR-TB lineage4.1.1.3 za
ERR11488546 Pre-XDR-TB lineage4.1.1.3 None
SAMN02585963 Pre-XDR-TB lineage4.1.1.3 za
ERR11488649 MDR-TB lineage4.1.1.3 None
SRR1167333 MDR-TB lineage4.1.1.3 None
ERR9993054 XDR-TB lineage4.1.1.3 None
ERR4809073 MDR-TB lineage4.1.1.3 za
SRR28394207 MDR-TB lineage4 None
ERR553355 MDR-TB lineage4.1.1.3 None
SRR1140965 MDR-TB lineage4.1.1.3 None
SRR1172836 Pre-XDR-TB lineage4.1.1.3 None
SRR1172873 MDR-TB lineage1.1.2 None
SRR1173213 Pre-XDR-TB lineage4.1.1.3 None
SRR1173407 MDR-TB lineage4.1.1.3 None
SRR9971050 MDR-TB lineage4.1.1.3 None
ERR11488358 Pre-XDR-TB lineage4.1.1.3 None
ERR2200061 MDR-TB lineage4.1.1.3 None
ERR4020194 MDR-TB lineage4.1.1.3 None
ERR7737692 MDR-TB lineage4.1.1.3 None
ERR553204 MDR-TB lineage4.1.1.3 sz
ERR553354 MDR-TB lineage4.1.1.3 sz
ERR550959 MDR-TB lineage4.1.1.3 sz
ERR553028 MDR-TB lineage4.1.1.3 sz
ERR550864 MDR-TB lineage4.1.1.3 sz
ERR553343 MDR-TB lineage4.1.1.3 sz
ERR553105 MDR-TB lineage4.1.1.3 sz
ERR551241 MDR-TB lineage4.1.1.3 sz
ERR552720 MDR-TB lineage4.1.1.3 sz
ERR552917 MDR-TB lineage4.1.1.3 sz
ERR552151 MDR-TB lineage4.1.1.3 sz
ERR552361 MDR-TB lineage4.1.1.3 sz
ERR551246 MDR-TB lineage4.1.1.3 sz
ERR550813 MDR-TB lineage4.1.1.3 sz
ERR551393 MDR-TB lineage4.1.1.3 sz
ERR552296 Pre-XDR-TB lineage4.1.1.3 sz
ERR552288 MDR-TB lineage4.1.1.3 sz
ERR552073 MDR-TB lineage4.1.1.3 sz
ERR551938 MDR-TB lineage4.1.1.3 sz
ERR552751 MDR-TB lineage4.1.1.3 sz
ERR550863 MDR-TB lineage4.1.1.3 None
SRR29017042 MDR-TB lineage1.1.2 None
SRR11662202 MDR-TB lineage1.1.1 None
ERR11043545 MDR-TB lineage3.1 None
ERR553356 Other lineage4.1.1;lineage4.9 None
SAMN02403520 MDR-TB lineage4.4.1.1.1 za
SAMN02403522 MDR-TB lineage4.1.1.3 za
SAMN02403523 MDR-TB lineage4.1.1.3 za
ERR552074 MDR-TB lineage4.1.1.3 None
ERR7737897 MDR-TB lineage4.1.1.3 None
SRR26331642 MDR-TB lineage4.1.1.3 None
ERR13286077 MDR-TB lineage4.1.1.3 None
SRR1167266 MDR-TB lineage4.1.1.3 None
SRR1172848 MDR-TB lineage1.1.2 None
ERR13286208 Pre-XDR-TB lineage4.1.1.3 None
ERR2199750 Other lineage4.1.1;lineage4.9 None
ERR10680015 RR-TB lineage4.1.2.1 None
ERR2515346 MDR-TB lineage4.1.1.3 za
ERR553186 MDR-TB lineage4.1.1.3 sz
ERR550636 MDR-TB lineage4.1.1.3 None
ERR10680028 RR-TB lineage4.1.2.1 None
ERR550637 MDR-TB lineage4.1.1.3 None
SRR1173441 Pre-XDR-TB lineage4.1.1.3 None
SRR1167307 MDR-TB lineage4.1.1.3 None
SRR9971086 MDR-TB lineage4.1.1.3 None
SRR1184339 Pre-XDR-TB lineage4.1.1.3 None
SRR1167254 MDR-TB lineage4.4.1.1.1 None
ERR11488464 MDR-TB lineage4.1.1.3 None
ERR11488540 Pre-XDR-TB lineage4.1.1.3 None
ERR552289 MDR-TB lineage4.1.1.3 None
SRR29097013 Pre-XDR-TB lineage4.1.1.3 None
ERR553185 MDR-TB lineage4.1.1.3 None
SAMN02350428 Pre-XDR-TB lineage4.1.1.3 za
ERR13284754 Pre-XDR-TB lineage4.1.3 None
SRR29017262 MDR-TB lineage1.1.3.1 None
SRR1169289 MDR-TB lineage4.1.1.3 None
SRR1173724 MDR-TB lineage4.1.1.3;lineage4.8 None
ERR13261958 Pre-XDR-TB lineage2.2;lineage3 None
ERR4020195 Pre-XDR-TB lineage4.1.1.3 None
SRR1180152 Pre-XDR-TB lineage4.1.1.3 None
SRR29055667 MDR-TB lineage4.1.1.3 None
ERR11488467 Pre-XDR-TB lineage4.1.1.3 None
SRR29273805 MDR-TB lineage4.8 None
SRR7592325 MDR-TB lineage4.8 None
SRR9971237 Pre-XDR-TB lineage4.1.1.3 None
ERR551240 MDR-TB lineage4.1.1.3 None
ERR11488954 XDR-TB lineage4.1.1.3 None
ERR552295 Pre-XDR-TB lineage4.1.1.3 None
ERR2515262 Pre-XDR-TB lineage4.1.1.3 None
ERR2199805 MDR-TB lineage4.1.1.3 None
SRR1184019 Pre-XDR-TB lineage4.1.1.3 None
SRR1196541 Pre-XDR-TB lineage4.1.1.3 None
SRR1181322 Pre-XDR-TB lineage4.1.1.3 None
ERR9993087 XDR-TB lineage4.1.1.3 None
SRR1165673 MDR-TB lineage4.1.1.3 None
ERR4830549 MDR-TB lineage4.1.1.3 None
SRR1173456 Pre-XDR-TB lineage4.1.1.3 None
SRR1165274 MDR-TB lineage4.1.1.3 None
ERR11488914 Pre-XDR-TB lineage4.1.1.3 None
SRR11349141 MDR-TB lineage4.1.1.3 None
SRR1011465 Pre-XDR-TB lineage4.1.1.3 None
SRR1140951 Pre-XDR-TB lineage4.1.1.3 None
ERR4423759 MDR-TB lineage4.6.2.2 None
ERR11488460 MDR-TB lineage4.1.1.3 None
ERR7737679 MDR-TB lineage4.1.1.3 None
SRR9738484 MDR-TB lineage4.8 None
SRR1173876 Pre-XDR-TB lineage4.1.1.3 None
ERR2199778 MDR-TB lineage4.1.1.3 None
ERR3132148 MDR-TB lineage4.1.2.1 None
ERR3335739 Pre-XDR-TB lineage3 pk
ERR11488904 MDR-TB lineage4.1.1.3 None
SRR1169167 MDR-TB lineage4.1.1.3 None
SRR1173737 MDR-TB lineage4.1.1.3 None
SRR1169190 MDR-TB lineage4.1.1.3 None
ERR5865065 MDR-TB lineage4.8 None
SRR9971128 MDR-TB lineage4.1.1.3 None
SRR29273735 MDR-TB lineage4.8 None
ERR4822342 MDR-TB lineage1.2.1.2.1 None
SRR1019158 Pre-XDR-TB lineage4.1.1.3 None
SRR10869076 Pre-XDR-TB lineage4.1.1.3 None
ERR11081912 MDR-TB lineage3.1 None
ERR2653163 HR-TB lineage4.9 None
SAMN02403532 Pre-XDR-TB lineage4.1.1.3 za
SAMN02403546 MDR-TB lineage4.1.1.3 za
SAMN02403533 MDR-TB lineage4.1.1.3 za
SAMN02403541 MDR-TB lineage4.1.1.3 za
SAMN02403542 MDR-TB lineage4.1.1.3 za
ERR552181 MDR-TB lineage4.1.1.3 None
ERR7361958 Pre-XDR-TB lineage4.1.1.3 None